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The map label for this gene is 17544788

Identifier: 17544788

GI number: 17544788

Start: 78593

End: 79765

Strand: Reverse

Name: 17544788

Synonym: RSc0069

Alternate gene names: NA

Gene position: 79765-78593 (Counterclockwise)

Preceding gene: 161621735

Following gene: 17544787

Centisome position: 2.15

GC content: 69.14

Gene sequence:

>1173_bases
ATGCTGTCCAAGCCCGCCATGAAACCGCGCCAGTCTTACGTTTGCGCCCTCTCGGCGGTTGCCGCGGCAGCGCTGTTCTG
CGCGGGCGCCACGCACGCCGCCGAGCGGACTGTCTCGCCGGCACAACAAGCGCAGGCCACGGCGGCCGCGCAAGCCGGGA
TCCCCGAATCCGCCCTCTCGCCCAAAGCGCCCGCGCAATACACCGTGCGCCGCGGCGACACGCTGTGGGCCATTTCCGGC
AAGTACCTCAAGCAGCCGTGGCGCTGGCCCGAACTGTGGGGCATGAACCGCGAGCAGATCCGCAACCCGCACCTGATCTA
TCCGGGCCAGATCCTGTACCTGCACCATGCCAACGGCCGCGCCTGGCTGTCGAGCTCGCCGGCTTCCGCCGAGGGCAGCA
CGGTGCGCCTGTCGCCGCATACGCGCGTGGCCGGCCAGGACGGCGACGCCATCTCCAGCATTCCCTCTTCGGTCATCGAG
CCGTTCCTGACCCAGCCGATCGTGGTGGATGAAGCAACGCTGGCCACGCCGGCACGCATCTTCGAACTGCCGGAGGCGCG
CGTCTATATGGGCAAGGGCGAAAACGCCTACGCCCGCGGCCTGCCCGATGGCGAAGCCGGCCAGCCCGGCACCGTGTGGC
AGGCATATCGCCCGGTCAAGCCGCTCAAGGATCCGGTCACCGGCACCGTGCTCGGCTACGAGGCCGACTTCCTCGGTACC
CTGCGCGTGGTGCGCGCGGCCACCGGCCCGCAAGCCGTCTCCAAGATGGAAGTGCTGTCGTCCAAGGAAGAGATGGGCGT
CGGCACCCACCTGATGCCGGTACCGGCGCGTGAGCCGGTGCGCTACTCCCCGCATGCGCCGGAAGGCGAGATCCGCGGCG
CGGTCGCCAAGGTCACCGGCGGGGTGCAGTTCGGCGGGTCCGACCAGGTGGTCGTGCTGAACATCGGCAGCGCCAACGGG
CTGGAGCCGGGCCATGTACTGGCGCTGTCGCGCGCGGGCAAGGTGGTCAACGACACGACCGCGGGCAACGAGCCCGTGCA
GCTGCCCGAGGAACGTTATGGCCTGGCCTTTGTGTTCCGCGTGTTCCAGCACGTGGCCTATGCGCTGGTGACGGATGCGT
CGAACACAGTGGAAGTGGGCGATGCAGCCATCAGCCCGACGACGCAGCCCTGA

Upstream 100 bases:

>100_bases
CGACACGCAAGCGCGCAGCGGCGGCGGCCGGGCGTCGGACACTACGTACGCGGACCACTCGCCGATTCTTCAAAGAATAA
TGCGCCATCGTAACACACCG

Downstream 100 bases:

>100_bases
CGTCACACCTGCCTGATTTGATCGATGCCTCACAGGTCGCGGCGCCCGCCGCGACCGCTCCCGCCGATCCCCTCGACGCC
ACACGCGATCCCGCCGAGCT

Product: signal peptide protein

Products: NA

Alternate protein names: LysM Domain Protein; Cell Wall Degradation; LysM Motif-Containing Protein; Protein Containing LysM Domain; Signal Peptide Protein; LysM Family Cell Wall Degradation Protein; Lysin Domain-Containing Protein; Lysm Domain Protein; Signal Peptide Protein LysM Domain Protein; Secreted Protein

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MLSKPAMKPRQSYVCALSAVAAAALFCAGATHAAERTVSPAQQAQATAAAQAGIPESALSPKAPAQYTVRRGDTLWAISG
KYLKQPWRWPELWGMNREQIRNPHLIYPGQILYLHHANGRAWLSSSPASAEGSTVRLSPHTRVAGQDGDAISSIPSSVIE
PFLTQPIVVDEATLATPARIFELPEARVYMGKGENAYARGLPDGEAGQPGTVWQAYRPVKPLKDPVTGTVLGYEADFLGT
LRVVRAATGPQAVSKMEVLSSKEEMGVGTHLMPVPAREPVRYSPHAPEGEIRGAVAKVTGGVQFGGSDQVVVLNIGSANG
LEPGHVLALSRAGKVVNDTTAGNEPVQLPEERYGLAFVFRVFQHVAYALVTDASNTVEVGDAAISPTTQP

Sequences:

>Translated_390_residues
MLSKPAMKPRQSYVCALSAVAAAALFCAGATHAAERTVSPAQQAQATAAAQAGIPESALSPKAPAQYTVRRGDTLWAISG
KYLKQPWRWPELWGMNREQIRNPHLIYPGQILYLHHANGRAWLSSSPASAEGSTVRLSPHTRVAGQDGDAISSIPSSVIE
PFLTQPIVVDEATLATPARIFELPEARVYMGKGENAYARGLPDGEAGQPGTVWQAYRPVKPLKDPVTGTVLGYEADFLGT
LRVVRAATGPQAVSKMEVLSSKEEMGVGTHLMPVPAREPVRYSPHAPEGEIRGAVAKVTGGVQFGGSDQVVVLNIGSANG
LEPGHVLALSRAGKVVNDTTAGNEPVQLPEERYGLAFVFRVFQHVAYALVTDASNTVEVGDAAISPTTQP
>Mature_390_residues
MLSKPAMKPRQSYVCALSAVAAAALFCAGATHAAERTVSPAQQAQATAAAQAGIPESALSPKAPAQYTVRRGDTLWAISG
KYLKQPWRWPELWGMNREQIRNPHLIYPGQILYLHHANGRAWLSSSPASAEGSTVRLSPHTRVAGQDGDAISSIPSSVIE
PFLTQPIVVDEATLATPARIFELPEARVYMGKGENAYARGLPDGEAGQPGTVWQAYRPVKPLKDPVTGTVLGYEADFLGT
LRVVRAATGPQAVSKMEVLSSKEEMGVGTHLMPVPAREPVRYSPHAPEGEIRGAVAKVTGGVQFGGSDQVVVLNIGSANG
LEPGHVLALSRAGKVVNDTTAGNEPVQLPEERYGLAFVFRVFQHVAYALVTDASNTVEVGDAAISPTTQP

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41351; Mature: 41351

Theoretical pI: Translated: 7.75; Mature: 7.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSKPAMKPRQSYVCALSAVAAAALFCAGATHAAERTVSPAQQAQATAAAQAGIPESALS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHCCCCHHHCC
PKAPAQYTVRRGDTLWAISGKYLKQPWRWPELWGMNREQIRNPHLIYPGQILYLHHANGR
CCCCCEEEEECCCEEEEECCHHHCCCCCCHHHHCCCHHHHCCCCEECCCEEEEEEECCCC
AWLSSSPASAEGSTVRLSPHTRVAGQDGDAISSIPSSVIEPFLTQPIVVDEATLATPARI
EEECCCCCCCCCCEEEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHH
FELPEARVYMGKGENAYARGLPDGEAGQPGTVWQAYRPVKPLKDPVTGTVLGYEADFLGT
HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCHHHHHH
LRVVRAATGPQAVSKMEVLSSKEEMGVGTHLMPVPAREPVRYSPHAPEGEIRGAVAKVTG
HHHHHHCCCHHHHHHHHHHHCHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHEEEEEEC
GVQFGGSDQVVVLNIGSANGLEPGHVLALSRAGKVVNDTTAGNEPVQLPEERYGLAFVFR
CEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHH
VFQHVAYALVTDASNTVEVGDAAISPTTQP
HHHHHHHHHHCCCCCCEECCCCCCCCCCCC
>Mature Secondary Structure
MLSKPAMKPRQSYVCALSAVAAAALFCAGATHAAERTVSPAQQAQATAAAQAGIPESALS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHCCCCHHHCC
PKAPAQYTVRRGDTLWAISGKYLKQPWRWPELWGMNREQIRNPHLIYPGQILYLHHANGR
CCCCCEEEEECCCEEEEECCHHHCCCCCCHHHHCCCHHHHCCCCEECCCEEEEEEECCCC
AWLSSSPASAEGSTVRLSPHTRVAGQDGDAISSIPSSVIEPFLTQPIVVDEATLATPARI
EEECCCCCCCCCCEEEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHH
FELPEARVYMGKGENAYARGLPDGEAGQPGTVWQAYRPVKPLKDPVTGTVLGYEADFLGT
HCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEEEECCHHHHHH
LRVVRAATGPQAVSKMEVLSSKEEMGVGTHLMPVPAREPVRYSPHAPEGEIRGAVAKVTG
HHHHHHCCCHHHHHHHHHHHCHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHEEEEEEC
GVQFGGSDQVVVLNIGSANGLEPGHVLALSRAGKVVNDTTAGNEPVQLPEERYGLAFVFR
CEEECCCCCEEEEEECCCCCCCCCEEEEEECCCCEEECCCCCCCCCCCCHHHHHHHHHHH
VFQHVAYALVTDASNTVEVGDAAISPTTQP
HHHHHHHHHHCCCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA