Click here to switch to the map view.

The map label for this gene is smf [H]

Identifier: 17544787

GI number: 17544787

Start: 77370

End: 78575

Strand: Reverse

Name: smf [H]

Synonym: RSc0068

Alternate gene names: 17544787

Gene position: 78575-77370 (Counterclockwise)

Preceding gene: 17544788

Following gene: 17544786

Centisome position: 2.11

GC content: 72.31

Gene sequence:

>1206_bases
TTGATCGATGCCTCACAGGTCGCGGCGCCCGCCGCGACCGCTCCCGCCGATCCCCTCGACGCCACACGCGATCCCGCCGA
GCTGGCCGCTTGGCTGCGGCTGACGGAAACGCCGGGCATCGGCCCCGTCGCCGCGCGGCAACTGCTGGCCGCTTTCGGGC
TACCCCAGGACATCTTCCGTCAATCCTATGCGGCACTCGCCAAGGTGCTGCCTGAACGACAAGCGCGCGCGCTGCTGGCC
GAGCCGGACGAAGCGCTCGCCGCGCTGATCGAGCGGACTGCCGCCTGGGCCGCCGAACCGGGCAATGCCATCTTCACGCT
GGCCGACCGTGGCTACCCGCCCCGGCTGCTGGAACTCCCCGATCCGCCGACGCTGCTGTATGCCAAGGGCGATGTCTCGC
TGCTGCGGGCTGCGGCGGTGGGCGTGGTCGGCGCGCGCAGCGCCACCGCGCAGGGTCTGGAGAACGCCCGCGCCTTCGCG
CAGGCGCTGTCCGCCGCCAACGTGACGATCGTCTCGGGGCTGGCGCTGGGCATCGATGCCGCCGCACACGACGGCGCGCT
GACCGGGCCCGGCAGCACCATCGCGGTGGTCGGCACGGGGCTGGACATGGTCTACCCGGCCCGGAACCGAGCCCTGGCAC
ACCACATCGCCGAAGCCGGGCTGATCCTGTCGGAGTACCCGCTCGGCATGGGGGCACGGGCCGAGAACTTCCCGCGCCGC
AACCGGCTGATCGCCGGGCTCGCGCGCGGACTGCTGGTGGTGGAGGCCGCCGCGCAATCCGGTTCGCTGATCACCGCCCG
GCTGGCCGCCGAGCAGGGGCGCGATGTGTTCGCCATTCCCGGCTCGATCCATTCGCCGCTGGCCAAGGGCTGCCACCTGC
TGATCAAGCAGGGTGCCAAGCTGGTCGAGACGGCGGCCGACATCCTGGACGAACTGGGCTGGAGCCGCACACCGACGCCA
GCGACACGGACACCGCGCACGGCCGCCCAGGCACCTGTCCCCGCATCCGCCCCGGCCGCACGTCCGGCGGCAACGGCCGC
GGAAACCGCGTTGCTCGATGCGCTCGGCTTCGACCCGGTCGACCTCGACACCCTGTGCGAACGCACCGGCCAAACCGCGG
CCAACCTGTCGGCACAACTGCTGGCGCTGGAGCTGGCAGGCCACATCGAGCGCCAACCGGGCGGACGCTTTCTGCGGCTG
CCATAG

Upstream 100 bases:

>100_bases
ACGTGGCCTATGCGCTGGTGACGGATGCGTCGAACACAGTGGAAGTGGGCGATGCAGCCATCAGCCCGACGACGCAGCCC
TGACGTCACACCTGCCTGAT

Downstream 100 bases:

>100_bases
CACCTGTCTACAATAGGGCGACCTTTTTGCCGACCGCCCCATGCCGCTGCTCTCCCCCGACACCGACGCCGACGCACTGC
ATGCCCGCATCCGCGCGGGT

Product: SMF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MIDASQVAAPAATAPADPLDATRDPAELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFRQSYAALAKVLPERQARALLA
EPDEALAALIERTAAWAAEPGNAIFTLADRGYPPRLLELPDPPTLLYAKGDVSLLRAAAVGVVGARSATAQGLENARAFA
QALSAANVTIVSGLALGIDAAAHDGALTGPGSTIAVVGTGLDMVYPARNRALAHHIAEAGLILSEYPLGMGARAENFPRR
NRLIAGLARGLLVVEAAAQSGSLITARLAAEQGRDVFAIPGSIHSPLAKGCHLLIKQGAKLVETAADILDELGWSRTPTP
ATRTPRTAAQAPVPASAPAARPAATAAETALLDALGFDPVDLDTLCERTGQTAANLSAQLLALELAGHIERQPGGRFLRL
P

Sequences:

>Translated_401_residues
MIDASQVAAPAATAPADPLDATRDPAELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFRQSYAALAKVLPERQARALLA
EPDEALAALIERTAAWAAEPGNAIFTLADRGYPPRLLELPDPPTLLYAKGDVSLLRAAAVGVVGARSATAQGLENARAFA
QALSAANVTIVSGLALGIDAAAHDGALTGPGSTIAVVGTGLDMVYPARNRALAHHIAEAGLILSEYPLGMGARAENFPRR
NRLIAGLARGLLVVEAAAQSGSLITARLAAEQGRDVFAIPGSIHSPLAKGCHLLIKQGAKLVETAADILDELGWSRTPTP
ATRTPRTAAQAPVPASAPAARPAATAAETALLDALGFDPVDLDTLCERTGQTAANLSAQLLALELAGHIERQPGGRFLRL
P
>Mature_401_residues
MIDASQVAAPAATAPADPLDATRDPAELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFRQSYAALAKVLPERQARALLA
EPDEALAALIERTAAWAAEPGNAIFTLADRGYPPRLLELPDPPTLLYAKGDVSLLRAAAVGVVGARSATAQGLENARAFA
QALSAANVTIVSGLALGIDAAAHDGALTGPGSTIAVVGTGLDMVYPARNRALAHHIAEAGLILSEYPLGMGARAENFPRR
NRLIAGLARGLLVVEAAAQSGSLITARLAAEQGRDVFAIPGSIHSPLAKGCHLLIKQGAKLVETAADILDELGWSRTPTP
ATRTPRTAAQAPVPASAPAARPAATAAETALLDALGFDPVDLDTLCERTGQTAANLSAQLLALELAGHIERQPGGRFLRL
P

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=329, Percent_Identity=40.7294832826748, Blast_Score=213, Evalue=2e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 41281; Mature: 41281

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDASQVAAPAATAPADPLDATRDPAELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFR
CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
QSYAALAKVLPERQARALLAEPDEALAALIERTAAWAAEPGNAIFTLADRGYPPRLLELP
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECC
DPPTLLYAKGDVSLLRAAAVGVVGARSATAQGLENARAFAQALSAANVTIVSGLALGIDA
CCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHCCC
AAHDGALTGPGSTIAVVGTGLDMVYPARNRALAHHIAEAGLILSEYPLGMGARAENFPRR
CCCCCCCCCCCCEEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
NRLIAGLARGLLVVEAAAQSGSLITARLAAEQGRDVFAIPGSIHSPLAKGCHLLIKQGAK
HHHHHHHHHHHHHEEHHCCCCCEEEEEEHHHCCCEEEECCCCHHHHHHHHHHHHHHHCHH
LVETAADILDELGWSRTPTPATRTPRTAAQAPVPASAPAARPAATAAETALLDALGFDPV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
DLDTLCERTGQTAANLSAQLLALELAGHIERQPGGRFLRLP
CHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECC
>Mature Secondary Structure
MIDASQVAAPAATAPADPLDATRDPAELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFR
CCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
QSYAALAKVLPERQARALLAEPDEALAALIERTAAWAAEPGNAIFTLADRGYPPRLLELP
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEECC
DPPTLLYAKGDVSLLRAAAVGVVGARSATAQGLENARAFAQALSAANVTIVSGLALGIDA
CCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHCCC
AAHDGALTGPGSTIAVVGTGLDMVYPARNRALAHHIAEAGLILSEYPLGMGARAENFPRR
CCCCCCCCCCCCEEEEEECCCCEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
NRLIAGLARGLLVVEAAAQSGSLITARLAAEQGRDVFAIPGSIHSPLAKGCHLLIKQGAK
HHHHHHHHHHHHHEEHHCCCCCEEEEEEHHHCCCEEEECCCCHHHHHHHHHHHHHHHCHH
LVETAADILDELGWSRTPTPATRTPRTAAQAPVPASAPAARPAATAAETALLDALGFDPV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
DLDTLCERTGQTAANLSAQLLALELAGHIERQPGGRFLRLP
CHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8432722; 8112305; 9278503 [H]