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The map label for this gene is 17544753

Identifier: 17544753

GI number: 17544753

Start: 39866

End: 40459

Strand: Direct

Name: 17544753

Synonym: RSc0034

Alternate gene names: NA

Gene position: 39866-40459 (Clockwise)

Preceding gene: 17544749

Following gene: 17544754

Centisome position: 1.07

GC content: 68.18

Gene sequence:

>594_bases
ATGACCATCGCACCCGAGCAGCTCGACGCCCTGCGCCCGCACCTGCTGCGCTTTGCGCAGTTGCAGCTGCGTGATCCGGC
ACTGGCCGAGGACGTGGTCGCCGATACCGTCCTCGCCGTGCTGGAGCACCCCGAGCGCTTCGCCGGCAACGCCTCGCTCA
AGACCTACGTGATCGGCATCCTCAAGCACAAGATCATCGACGCGATCCGCTCGGGGCGGCGCGAAGTACGCGTCTCGCTG
CTTGCGGGCGGCGCATCCGACGAGACCGACCAGCGCACCGACGAGGCCGTCTTCGATGCCCTGTTCGCCGCCGACGGCCA
CTACCTGACGCCGCCGTCCGACTGGGGCAACCCCGATGCAGCGCTGTCGCGGCGCGAGTTCTTCGACATCCTGCAGATGT
GCGTCGACCGCCTGCCGCCGCGCGTCGGCCGCGTCTTCATGATGCGCGAGTGGCTGGAGCTGGAGACGGACGAGATCTGT
CAGGAATTGGAGATCACGGCGACCAATGCCTGGGCACTGCTGTACCGTGCCCGCATGCGCCTGCGCGCGTGCCTGGACCT
GCACTGGTTCGGCAACCAGGGCGCGGCCGCATAA

Upstream 100 bases:

>100_bases
TTTCGGCAGGCGGGATTTTACAAGAAAAGCCGGCGCGGTCCCGGGCGCGATGCGCGTGTCCGGCACGATCGTTGCCGGCG
GCAGACACCCGTGGGGAAAC

Downstream 100 bases:

>100_bases
CCGGGGAAGACCATGCCGAATCGTTGGGGAATGCTCACCTGCAAAGAAGCGCACCGCGTGGTGGTGAGCGGCCTGGACCG
CGATCTGTCCGCCGGCGAGC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MTIAPEQLDALRPHLLRFAQLQLRDPALAEDVVADTVLAVLEHPERFAGNASLKTYVIGILKHKIIDAIRSGRREVRVSL
LAGGASDETDQRTDEAVFDALFAADGHYLTPPSDWGNPDAALSRREFFDILQMCVDRLPPRVGRVFMMREWLELETDEIC
QELEITATNAWALLYRARMRLRACLDLHWFGNQGAAA

Sequences:

>Translated_197_residues
MTIAPEQLDALRPHLLRFAQLQLRDPALAEDVVADTVLAVLEHPERFAGNASLKTYVIGILKHKIIDAIRSGRREVRVSL
LAGGASDETDQRTDEAVFDALFAADGHYLTPPSDWGNPDAALSRREFFDILQMCVDRLPPRVGRVFMMREWLELETDEIC
QELEITATNAWALLYRARMRLRACLDLHWFGNQGAAA
>Mature_196_residues
TIAPEQLDALRPHLLRFAQLQLRDPALAEDVVADTVLAVLEHPERFAGNASLKTYVIGILKHKIIDAIRSGRREVRVSLL
AGGASDETDQRTDEAVFDALFAADGHYLTPPSDWGNPDAALSRREFFDILQMCVDRLPPRVGRVFMMREWLELETDEICQ
ELEITATNAWALLYRARMRLRACLDLHWFGNQGAAA

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014289
- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22212; Mature: 22080

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIAPEQLDALRPHLLRFAQLQLRDPALAEDVVADTVLAVLEHPERFAGNASLKTYVIGI
CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHH
LKHKIIDAIRSGRREVRVSLLAGGASDETDQRTDEAVFDALFAADGHYLTPPSDWGNPDA
HHHHHHHHHHCCHHHEEHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
ALSRREFFDILQMCVDRLPPRVGRVFMMREWLELETDEICQELEITATNAWALLYRARMR
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRACLDLHWFGNQGAAA
HHHHHHHHEECCCCCCC
>Mature Secondary Structure 
TIAPEQLDALRPHLLRFAQLQLRDPALAEDVVADTVLAVLEHPERFAGNASLKTYVIGI
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHCCCCHHHHHHHHH
LKHKIIDAIRSGRREVRVSLLAGGASDETDQRTDEAVFDALFAADGHYLTPPSDWGNPDA
HHHHHHHHHHCCHHHEEHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
ALSRREFFDILQMCVDRLPPRVGRVFMMREWLELETDEICQELEITATNAWALLYRARMR
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
LRACLDLHWFGNQGAAA
HHHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]