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The map label for this gene is yebA [H]

Identifier: 17232655

GI number: 17232655

Start: 6161214

End: 6162101

Strand: Reverse

Name: yebA [H]

Synonym: all5163

Alternate gene names: 17232655

Gene position: 6162101-6161214 (Counterclockwise)

Preceding gene: 17232657

Following gene: 17232645

Centisome position: 96.08

GC content: 47.3

Gene sequence:

>888_bases
ATGACTGTTTCCTACCGTCTGCTTTTACTCTGTAGTTTAGCCAGCACTATTGGACTGACGACTATACTCCCAAATGCAAA
CAAGGTTAACGCTGCTGTGGCGGGTTGCCCAATTCCAGCTTTATCTCGCTTCAAGCGCCATAAAGTGGTTCGTGGCGATA
CGTTAGTAACCATAGCCCAACGCTACAATCTCAGCCCGGAAACGCTGATTGGCATGAATCCATCTCTCCATGATGGTTCT
TCCCCATCTGTGGGTAGCGAGTTACAAATTCCTCCTTACAACGGGGTGGTGGTGGAAGTGCCTCAGGGTCAAACTTGGCG
GCAGATAGCTACGAGATACAAGGTTCGTCCTGATACTCTATTTGAGATTAATGGCTGTCAAGCAAATCCCAGAATTGTGT
TTATTCCTGGGGTGAATTGGTCGCCTAATGGCTCTTTTACCCATTCTCCTAGACCTTCCACTGCTAGAGCTTCTGCTCAG
TTAGCTGGCTATCCTTTTTCTCAGGCTGTGGAGGTAGGGTTACCTTATGGCTGGCAGATTAACCCCAATACGGGTGAAGT
ATTTTTCCACAGTGGTGTGGATTTATTGGCAGCATTGGGGACTCCTGTTGAGGCGATCGCACCAGGTACGGTAGTCTTTG
CTAAGGAGCAGGGTACTTACGGCAATTTGGTCATCATTAACCACAATGGCGGACTCCAAAGCCGCTACGCCCATCTTGAC
AGCATAAATGTTAAGGTTGGTCAAAAAGTTAATCAAGGCCAGTTACTCGGCACTGTCGGCACTACAGGACAACCTACAGC
CAAACAACCTCATCTTCATTTTGAAGTGCGTGTTAGTTCATCTCTAGGTTGGGTGGCAGAAAATCCTAAAGACTATTTGA
AACCATAA

Upstream 100 bases:

>100_bases
ATTGGTAACGGGTTCTTCCCCCCAGTCCCCAGTCCCCAGTCCCTAATCTCCAATTCCCAAACTAAAATTTAAGGTTAAGG
CTCTCTTGTAATTTGTCAAC

Downstream 100 bases:

>100_bases
TCACGGACTGTTGGGTGACCTTTTGGTTGGTTTAAGTAGTTTCCTGTAACCATTTATCGATAGATTCAGTAGATTTAACA
ATTTGCATCCCTGCTGCTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MTVSYRLLLLCSLASTIGLTTILPNANKVNAAVAGCPIPALSRFKRHKVVRGDTLVTIAQRYNLSPETLIGMNPSLHDGS
SPSVGSELQIPPYNGVVVEVPQGQTWRQIATRYKVRPDTLFEINGCQANPRIVFIPGVNWSPNGSFTHSPRPSTARASAQ
LAGYPFSQAVEVGLPYGWQINPNTGEVFFHSGVDLLAALGTPVEAIAPGTVVFAKEQGTYGNLVIINHNGGLQSRYAHLD
SINVKVGQKVNQGQLLGTVGTTGQPTAKQPHLHFEVRVSSSLGWVAENPKDYLKP

Sequences:

>Translated_295_residues
MTVSYRLLLLCSLASTIGLTTILPNANKVNAAVAGCPIPALSRFKRHKVVRGDTLVTIAQRYNLSPETLIGMNPSLHDGS
SPSVGSELQIPPYNGVVVEVPQGQTWRQIATRYKVRPDTLFEINGCQANPRIVFIPGVNWSPNGSFTHSPRPSTARASAQ
LAGYPFSQAVEVGLPYGWQINPNTGEVFFHSGVDLLAALGTPVEAIAPGTVVFAKEQGTYGNLVIINHNGGLQSRYAHLD
SINVKVGQKVNQGQLLGTVGTTGQPTAKQPHLHFEVRVSSSLGWVAENPKDYLKP
>Mature_294_residues
TVSYRLLLLCSLASTIGLTTILPNANKVNAAVAGCPIPALSRFKRHKVVRGDTLVTIAQRYNLSPETLIGMNPSLHDGSS
PSVGSELQIPPYNGVVVEVPQGQTWRQIATRYKVRPDTLFEINGCQANPRIVFIPGVNWSPNGSFTHSPRPSTARASAQL
AGYPFSQAVEVGLPYGWQINPNTGEVFFHSGVDLLAALGTPVEAIAPGTVVFAKEQGTYGNLVIINHNGGLQSRYAHLDS
INVKVGQKVNQGQLLGTVGTTGQPTAKQPHLHFEVRVSSSLGWVAENPKDYLKP

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=98, Percent_Identity=45.9183673469388, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082174, Length=217, Percent_Identity=31.3364055299539, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1789099, Length=105, Percent_Identity=38.0952380952381, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 31680; Mature: 31549

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSYRLLLLCSLASTIGLTTILPNANKVNAAVAGCPIPALSRFKRHKVVRGDTLVTIAQ
CCCHHHHHHHHHHHHHHCEEEECCCCCCCCEEEECCCCHHHHHHHHHCEECCCEEEEEEE
RYNLSPETLIGMNPSLHDGSSPSVGSELQIPPYNGVVVEVPQGQTWRQIATRYKVRPDTL
CCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCHHHHHHHHCCCCCCEE
FEINGCQANPRIVFIPGVNWSPNGSFTHSPRPSTARASAQLAGYPFSQAVEVGLPYGWQI
EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHCCCEECCCCHHHHHEECCCCCCEE
NPNTGEVFFHSGVDLLAALGTPVEAIAPGTVVFAKEQGTYGNLVIINHNGGLQSRYAHLD
CCCCCEEEEECCHHHHHHCCCCHHHHCCCEEEEEECCCCCCCEEEEECCCCCCHHHEEEE
SINVKVGQKVNQGQLLGTVGTTGQPTAKQPHLHFEVRVSSSLGWVAENPKDYLKP
EEEEEECCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEECCCHHHCCC
>Mature Secondary Structure 
TVSYRLLLLCSLASTIGLTTILPNANKVNAAVAGCPIPALSRFKRHKVVRGDTLVTIAQ
CCHHHHHHHHHHHHHHCEEEECCCCCCCCEEEECCCCHHHHHHHHHCEECCCEEEEEEE
RYNLSPETLIGMNPSLHDGSSPSVGSELQIPPYNGVVVEVPQGQTWRQIATRYKVRPDTL
CCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCHHHHHHHHCCCCCCEE
FEINGCQANPRIVFIPGVNWSPNGSFTHSPRPSTARASAQLAGYPFSQAVEVGLPYGWQI
EEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHCCCEECCCCHHHHHEECCCCCCEE
NPNTGEVFFHSGVDLLAALGTPVEAIAPGTVVFAKEQGTYGNLVIINHNGGLQSRYAHLD
CCCCCEEEEECCHHHHHHCCCCHHHHCCCEEEEEECCCCCCCEEEEECCCCCCHHHEEEE
SINVKVGQKVNQGQLLGTVGTTGQPTAKQPHLHFEVRVSSSLGWVAENPKDYLKP
EEEEEECCCCCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEECCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]