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The map label for this gene is ycf12

Identifier: 17232620

GI number: 17232620

Start: 6126610

End: 6126732

Strand: Reverse

Name: ycf12

Synonym: asl5128

Alternate gene names: 17232620

Gene position: 6126732-6126610 (Counterclockwise)

Preceding gene: 17232622

Following gene: 17232615

Centisome position: 95.52

GC content: 43.09

Gene sequence:

>123_bases
ATGTTTGACGCTTTAGCCAACATCAATTGGGAAGTTATTTTCCAGCTAACCTCTGTTGCACTAATAATCATTGCTGGGCC
TGCTGTGATTTTTGTGCTGGCATTCCGCAACGGCAACCTATAA

Upstream 100 bases:

>100_bases
AAGTAAATTAAATATTACAGGCGATCGCCGGATATGATCTAATACGGGTTTTGCAACTGCAACTGAGTAATTCTAAGACA
ATTGGGAGGAATAGAGACAA

Downstream 100 bases:

>100_bases
GAGTAATGAGCGCTGAGTGATTGTGAAATTTATACTCAGCACTCAGCACTCAGCATTGATAATGCTTGCATAGCGGCTTG
AATAATAGAATCATATTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 40; Mature: 40

Protein sequence:

>40_residues
MFDALANINWEVIFQLTSVALIIIAGPAVIFVLAFRNGNL

Sequences:

>Translated_40_residues
MFDALANINWEVIFQLTSVALIIIAGPAVIFVLAFRNGNL
>Mature_40_residues
MFDALANINWEVIFQLTSVALIIIAGPAVIFVLAFRNGNL

Specific function: A core subunit of photosystem II (PSII)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Single-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf12 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YCF12_NOSS1 (Q8YM13)

Other databases:

- EMBL:   BA000019
- PIR:   AH2446
- RefSeq:   NP_489168.1
- GeneID:   1108732
- GenomeReviews:   BA000019_GR
- KEGG:   ana:asl5128
- NMPDR:   fig|103690.1.peg.5435
- eggNOG:   NOG119170
- HOGENOM:   HBG440444
- ProtClustDB:   PRK13686
- BioCyc:   NSP103690:ASL5128-MONOMER
- GO:   GO:0015979
- HAMAP:   MF_01329
- InterPro:   IPR010284

Pfam domain/function: PF05969 DUF888

EC number: NA

Molecular weight: Translated: 4376; Mature: 4376

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x145bcbb4)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDALANINWEVIFQLTSVALIIIAGPAVIFVLAFRNGNL
CCCCCCCCCHHHEEEHHHEEEEEEECCHHEEEEEECCCCH
>Mature Secondary Structure
MFDALANINWEVIFQLTSVALIIIAGPAVIFVLAFRNGNL
CCCCCCCCCHHHEEEHHHEEEEEEECCHHEEEEEECCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840