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The map label for this gene is dppC [H]

Identifier: 17232495

GI number: 17232495

Start: 5976127

End: 5976945

Strand: Reverse

Name: dppC [H]

Synonym: all5003

Alternate gene names: 17232495

Gene position: 5976945-5976127 (Counterclockwise)

Preceding gene: 17232498

Following gene: 17232494

Centisome position: 93.19

GC content: 45.05

Gene sequence:

>819_bases
ATGCTGGTTGGGTTAGCTATCACTCTATTTTTCATCTTCTTGGCATTCTTCGCGCCTGTATTCCAAAGTTGGGGATGGCT
ACAAAACCCCAGAGAGTTTCTGGCTAACACACCTCAAGAAGCACCATCAGCCAAACATTGGTTCGGCACGACTCTTTTAG
GACATGATGTTTTCTCTCGGACATTATTTGGCGCACAAGCAGCGTTGCAAGTGGTAATTTTAGCCACGGCGCTGAGTATG
ATAGTTGGCGTGCCATTGGGAATGCTGAGTGGCTACCTTGGCGGTAGGTTAGATAAGGCATTACTGTTTCTCATGGACAG
TATCTACACCTTACCAGGACTGCTATTGTCGGTAACACTGGCGTTTGTAGTAGGCAGAGGAATCTTAAATGCAGCGATCG
CTATTAGTATCGCATACATTCCCCAATACTACCGCGTTGTGCGTAACCACACCGTCAGCGTCAAAACTGAAGTATTCATC
GAAGCAGCTCAAGCAATGGGGGCTTCTACTTGGATTGTGCTTTCTCGATATCTGTTTTTCAACGTCATTCAAAGCGTACC
CGTACTTTTTACCCTTAACGCCGCCGATGCAATTTTGGTACTAGGCGGTTTGGGTTTTTTAGGGCTAGGATTACCGGAAG
AAGTACCAGAATGGGGACTTGATTTAAAACAAGCTCTAGAAGCATTACCAACTGGGATTTGGTGGACTACACTATTTCCC
GGTTTAGCAATGACATTTATGGTAGTAGGGTTATCACTACTAGGAGAGGGGTTAAATGAATTTGTCAATCCTCGATTACG
AGGAGAAAATCGGAAATAG

Upstream 100 bases:

>100_bases
GTATCTTGCGCTATGCAGGCGATCGCTCATGACCATCACTAAACGTATACTGCCAAAATGGGGATCTTTTGTCAAAAAGC
CCAACCTTTCCCAAAAATTA

Downstream 100 bases:

>100_bases
ACAGTTGATGGTTGACAGTTGACAGTTGACGGTTGTCAATAGATTTTGGACTGTGGACTATGGACTTTTTTATTAATTAC
TGAGAGATTAAAGTGAAAGA

Product: permease protein of peptide ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MLVGLAITLFFIFLAFFAPVFQSWGWLQNPREFLANTPQEAPSAKHWFGTTLLGHDVFSRTLFGAQAALQVVILATALSM
IVGVPLGMLSGYLGGRLDKALLFLMDSIYTLPGLLLSVTLAFVVGRGILNAAIAISIAYIPQYYRVVRNHTVSVKTEVFI
EAAQAMGASTWIVLSRYLFFNVIQSVPVLFTLNAADAILVLGGLGFLGLGLPEEVPEWGLDLKQALEALPTGIWWTTLFP
GLAMTFMVVGLSLLGEGLNEFVNPRLRGENRK

Sequences:

>Translated_272_residues
MLVGLAITLFFIFLAFFAPVFQSWGWLQNPREFLANTPQEAPSAKHWFGTTLLGHDVFSRTLFGAQAALQVVILATALSM
IVGVPLGMLSGYLGGRLDKALLFLMDSIYTLPGLLLSVTLAFVVGRGILNAAIAISIAYIPQYYRVVRNHTVSVKTEVFI
EAAQAMGASTWIVLSRYLFFNVIQSVPVLFTLNAADAILVLGGLGFLGLGLPEEVPEWGLDLKQALEALPTGIWWTTLFP
GLAMTFMVVGLSLLGEGLNEFVNPRLRGENRK
>Mature_272_residues
MLVGLAITLFFIFLAFFAPVFQSWGWLQNPREFLANTPQEAPSAKHWFGTTLLGHDVFSRTLFGAQAALQVVILATALSM
IVGVPLGMLSGYLGGRLDKALLFLMDSIYTLPGLLLSVTLAFVVGRGILNAAIAISIAYIPQYYRVVRNHTVSVKTEVFI
EAAQAMGASTWIVLSRYLFFNVIQSVPVLFTLNAADAILVLGGLGFLGLGLPEEVPEWGLDLKQALEALPTGIWWTTLFP
GLAMTFMVVGLSLLGEGLNEFVNPRLRGENRK

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787054, Length=259, Percent_Identity=34.3629343629344, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1787760, Length=273, Percent_Identity=32.967032967033, Blast_Score=158, Evalue=3e-40,
Organism=Escherichia coli, GI1789964, Length=257, Percent_Identity=34.6303501945525, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789889, Length=233, Percent_Identity=33.4763948497854, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1787498, Length=270, Percent_Identity=30.3703703703704, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1787549, Length=215, Percent_Identity=30.6976744186047, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788505, Length=235, Percent_Identity=27.6595744680851, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29649; Mature: 29649

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9680333 [H]