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The map label for this gene is ydfH [H]

Identifier: 17232128

GI number: 17232128

Start: 5539895

End: 5541100

Strand: Reverse

Name: ydfH [H]

Synonym: all4636

Alternate gene names: 17232128

Gene position: 5541100-5539895 (Counterclockwise)

Preceding gene: 17232131

Following gene: 17232127

Centisome position: 86.39

GC content: 34.49

Gene sequence:

>1206_bases
ATGGGTCAATATATTAAAGTTCATAACCACCCTTTCCGCTTTTTACTATATCTAGAATGGATATTGTTAGCAATATCTAT
TATCACGTCAATATTGCCCTATCCTTCACCTAGATTTTCCAGTAGATTTCCAGAAATTACGATTATTAGTCTCACAATTT
TTGGATTAATGGGATTAAGATTACCCACCAGTAATAACTTAAATAAAATAGTTTATACTGTCTTTGAAATCATTTTAATT
TTTATTACTGGATTATTTGAAGGGAGATCTGCTCGGATGTTTCCCTTTCTCTACATTATTTTAGTGACTCGTAGTTGTTT
AATTTTTAAGTTACCTGGACGTTTATCTGTCACTTTAACTTCGTTTAGTTTGTTTTTATTCACATTAATAAATCGATTAC
CTCGTTCTCCACTTCCAATACAAGCCCAAGAGCGTTTTCGCTTTTTTACGCTGAGTTTGACACTTGTATTTGGCTTAAGT
TTAATTTTCGTCTTGCTGTTAATGAATAGCTTATTATCGGAACGTCAGAGTCGAGAAGAATTAGCTGTTGCCAATGAAAA
ACTACGTCAATATGCTCTACGTATTGAAAACCAAGCAACTCTAGAAGAACGCAATCGTATTGCACGAGAAATTCACGACT
CTTTAGGTCATTCCCTCACAGCATTGAATTTACAATTAGAAACTGCGTTAAAACTTGCACAGTCTAATCCCAATAAAGCA
CAAACTTTTTTAGTTAGGGCAAAAGAGCTTGGTTCTAAAGCTTTACAAGATGTGAGAAATTCTGTTTCTGCTATGCGCTC
TCATCCATTGCAGGGCAAAACTTTAGAACAAGCAATTGATATCATAGCAGCAGACTTTGAGCAGAATACTGGGATTATAT
TAACTAGTAGTTTTAATCTTGATTACAAATTATCAACAGAAGTTAGTACAGCCATATATAGAATTATCCAAGAATCGTTA
ACCAATATTTCTAAGCACGCCAGAGCCACAGAAGTTATTTTAGAAGTTTCTCTTAATCGAGGTAGTTTATCTTTAATAAT
TCGGGATAATGGTAGAGGGTTTGATATCCAACAAAATACCACAGGTTTTGGATTACAAAGTATGCGCGATCGCACTCTGG
CTTTAGGAGGAAAATTTGCTATCAATAGCGCTGTTGGTGATGGTTGTCAAATTACAGTTGATATTCCCGCAAGCAGATTA
ATATGA

Upstream 100 bases:

>100_bases
TATTGTGCCAGTTGCGTGAGTCCTGGTAAATATAGAGAACTCGTCAGCAGCCAGAAGTCATATCAATTCAAAATAATCAC
TATATTTTGTAGTATAAACT

Downstream 100 bases:

>100_bases
TTAAAGTCTTATTAGTAGATGATCAAAATCTGATCCGTCAAGGATTAAGAGCATTATTAGAGCTAGAACCTGATATAGAA
ATCGTGGGAGAGGCAGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MGQYIKVHNHPFRFLLYLEWILLAISIITSILPYPSPRFSSRFPEITIISLTIFGLMGLRLPTSNNLNKIVYTVFEIILI
FITGLFEGRSARMFPFLYIILVTRSCLIFKLPGRLSVTLTSFSLFLFTLINRLPRSPLPIQAQERFRFFTLSLTLVFGLS
LIFVLLLMNSLLSERQSREELAVANEKLRQYALRIENQATLEERNRIAREIHDSLGHSLTALNLQLETALKLAQSNPNKA
QTFLVRAKELGSKALQDVRNSVSAMRSHPLQGKTLEQAIDIIAADFEQNTGIILTSSFNLDYKLSTEVSTAIYRIIQESL
TNISKHARATEVILEVSLNRGSLSLIIRDNGRGFDIQQNTTGFGLQSMRDRTLALGGKFAINSAVGDGCQITVDIPASRL
I

Sequences:

>Translated_401_residues
MGQYIKVHNHPFRFLLYLEWILLAISIITSILPYPSPRFSSRFPEITIISLTIFGLMGLRLPTSNNLNKIVYTVFEIILI
FITGLFEGRSARMFPFLYIILVTRSCLIFKLPGRLSVTLTSFSLFLFTLINRLPRSPLPIQAQERFRFFTLSLTLVFGLS
LIFVLLLMNSLLSERQSREELAVANEKLRQYALRIENQATLEERNRIAREIHDSLGHSLTALNLQLETALKLAQSNPNKA
QTFLVRAKELGSKALQDVRNSVSAMRSHPLQGKTLEQAIDIIAADFEQNTGIILTSSFNLDYKLSTEVSTAIYRIIQESL
TNISKHARATEVILEVSLNRGSLSLIIRDNGRGFDIQQNTTGFGLQSMRDRTLALGGKFAINSAVGDGCQITVDIPASRL
I
>Mature_400_residues
GQYIKVHNHPFRFLLYLEWILLAISIITSILPYPSPRFSSRFPEITIISLTIFGLMGLRLPTSNNLNKIVYTVFEIILIF
ITGLFEGRSARMFPFLYIILVTRSCLIFKLPGRLSVTLTSFSLFLFTLINRLPRSPLPIQAQERFRFFTLSLTLVFGLSL
IFVLLLMNSLLSERQSREELAVANEKLRQYALRIENQATLEERNRIAREIHDSLGHSLTALNLQLETALKLAQSNPNKAQ
TFLVRAKELGSKALQDVRNSVSAMRSHPLQGKTLEQAIDIIAADFEQNTGIILTSSFNLDYKLSTEVSTAIYRIIQESLT
NISKHARATEVILEVSLNRGSLSLIIRDNGRGFDIQQNTTGFGLQSMRDRTLALGGKFAINSAVGDGCQITVDIPASRLI

Specific function: Member of the two-component regulatory system ydfH/ydfI. May activate ydfI by phosphorylation [H]

COG id: COG4585

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI87082311, Length=224, Percent_Identity=32.1428571428571, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788812, Length=201, Percent_Identity=31.3432835820896, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787474, Length=224, Percent_Identity=26.7857142857143, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR000014
- InterPro:   IPR011712 [H]

Pfam domain/function: PF02518 HATPase_c; PF07730 HisKA_3 [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 45151; Mature: 45020

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQYIKVHNHPFRFLLYLEWILLAISIITSILPYPSPRFSSRFPEITIISLTIFGLMGLR
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHCC
LPTSNNLNKIVYTVFEIILIFITGLFEGRSARMFPFLYIILVTRSCLIFKLPGRLSVTLT
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCEEEEHH
SFSLFLFTLINRLPRSPLPIQAQERFRFFTLSLTLVFGLSLIFVLLLMNSLLSERQSREE
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVANEKLRQYALRIENQATLEERNRIAREIHDSLGHSLTALNLQLETALKLAQSNPNKA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHCCCCHH
QTFLVRAKELGSKALQDVRNSVSAMRSHPLQGKTLEQAIDIIAADFEQNTGIILTSSFNL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCC
DYKLSTEVSTAIYRIIQESLTNISKHARATEVILEVSLNRGSLSLIIRDNGRGFDIQQNT
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEEECCCCCCCCCCC
TGFGLQSMRDRTLALGGKFAINSAVGDGCQITVDIPASRLI
CCCCHHHHCCHHHCCCCCEEEECCCCCCCEEEEECCHHHCC
>Mature Secondary Structure 
GQYIKVHNHPFRFLLYLEWILLAISIITSILPYPSPRFSSRFPEITIISLTIFGLMGLR
CCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHCC
LPTSNNLNKIVYTVFEIILIFITGLFEGRSARMFPFLYIILVTRSCLIFKLPGRLSVTLT
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCEEEEHH
SFSLFLFTLINRLPRSPLPIQAQERFRFFTLSLTLVFGLSLIFVLLLMNSLLSERQSREE
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAVANEKLRQYALRIENQATLEERNRIAREIHDSLGHSLTALNLQLETALKLAQSNPNKA
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHCCCCHH
QTFLVRAKELGSKALQDVRNSVSAMRSHPLQGKTLEQAIDIIAADFEQNTGIILTSSFNL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCC
DYKLSTEVSTAIYRIIQESLTNISKHARATEVILEVSLNRGSLSLIIRDNGRGFDIQQNT
CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCEEEEEEECCCCCCCCCCC
TGFGLQSMRDRTLALGGKFAINSAVGDGCQITVDIPASRLI
CCCCHHHHCCHHHCCCCCEEEECCCCCCCEEEEECCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]