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The map label for this gene is ydcM [C]

Identifier: 17231957

GI number: 17231957

Start: 5350308

End: 5351519

Strand: Reverse

Name: ydcM [C]

Synonym: all4465

Alternate gene names: 17231957

Gene position: 5351519-5350308 (Counterclockwise)

Preceding gene: 17231959

Following gene: 17231956

Centisome position: 83.44

GC content: 40.43

Gene sequence:

>1212_bases
ATGATTGTTTTAGAGTTTAAAGCTAAAGGCAAAACAACTCAATATGTAGCCATTGATGAGGCGATTAGAACCTGTCAATT
CGTTCGCAACAAAGCTATTCGTTTTTGGATGGATAACCGAGGTGTAGGGCAGAAAGACTTATATCGTCTTAGTAAGGTTC
TCAGACATGAGTTTTCTTTTGTCAAGGCTTTGAACTCTAGTGCTTGCCAAGCTTCTATCGAACGGGCTTATAGTTCTATT
GCTCGTTTTTACGACAACTGTAAAAAGTCTGTTCCAGGTAAGAAAGGTTATCCACAGTTTAAAAAAAACAACCGTTCAGT
TGAATATAAAACCTCTGGATGGTCACTTTCTGAAACTAGAAAGCAAATCACTTTTACTGACAAAAAAGGTATTGGCAAAC
TCAATCTCAAGGGAACGTGGAATTTAAACTTCTACCAATTGGAGCAGATAAAACGAGTTAGGTTAGTCCGTCGTGCCGAT
GGGTATTATGTTCAATTCCTGATTAGCGCAGATAACAAAGTAGAAACACAACCGACTGGTAAAACCATTGGTTTAGATGT
TGGTTTAAAAGAGTTCTACACCGATAGCAACGGACATACAGAACCTAACCCTAAGTTTTATCGCACAGGAGAGAAGCGTC
TAAAGTTTAGACAAAGGCGCGTTTCAAGGCATCAGAAAGGCTCTACCAATCGCAAAAAAGCCCTTAATAAATTAGGGCGA
GTACACCTCAAAATAAGTAGGCAACGTGAAGAACACGCTAAGAGAGTAGCGCGTTGCGTAATCCAATCTCACGATTTGGT
CGCCTATGAAGATTTGAGGGTTAAAAACTTAGTTAAGAATCACTGTCTCGCTAAATCTATTAATGATGCTGGTTGGTATC
AATTCAGAAAATGGTTGGAGTATTTCGGTGTGAAATTTGGCCGGATAACTGTAGCTGTTAATCCTGCGTACACAACAAGC
CAATGCTCTAATTGTGGCGCAGTAGTCAAAAAATCTCTATCCACAAGAACTCATGTTTGTGAATGCGGATTTGTGATGGA
TAGAGATTGGAACGCAGCGATTAACATTCTGAAACTAGCCTTGGGTACTACGGGTCACGTAGGAACCTGGATCTATGATC
CGAACGCTTCAGGAGATTCGTCCTCTACTCATGCTGGAGAAATCTTGTGTGAGCAAGTTGGGTCTATGAATGAAGAATCT
CCGCACTTATAG

Upstream 100 bases:

>100_bases
TCCGTACAATATAATTACCAAGAAACTGGGTCTAAAGCCCCGTCCTTGAAGGACGGCTTTGATTATGGTATAATATTTGC
GTAGGATTTGTCCACGTAAA

Downstream 100 bases:

>100_bases
GGCGGAGAGTGTCAACTATATTCCCTCATATCCGAGAGAGTTGTGTGCCTTTTTAGTCTAAAATTAATTTTAATCAAGGT
AACAACATTTAACGGAAACT

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MIVLEFKAKGKTTQYVAIDEAIRTCQFVRNKAIRFWMDNRGVGQKDLYRLSKVLRHEFSFVKALNSSACQASIERAYSSI
ARFYDNCKKSVPGKKGYPQFKKNNRSVEYKTSGWSLSETRKQITFTDKKGIGKLNLKGTWNLNFYQLEQIKRVRLVRRAD
GYYVQFLISADNKVETQPTGKTIGLDVGLKEFYTDSNGHTEPNPKFYRTGEKRLKFRQRRVSRHQKGSTNRKKALNKLGR
VHLKISRQREEHAKRVARCVIQSHDLVAYEDLRVKNLVKNHCLAKSINDAGWYQFRKWLEYFGVKFGRITVAVNPAYTTS
QCSNCGAVVKKSLSTRTHVCECGFVMDRDWNAAINILKLALGTTGHVGTWIYDPNASGDSSSTHAGEILCEQVGSMNEES
PHL

Sequences:

>Translated_403_residues
MIVLEFKAKGKTTQYVAIDEAIRTCQFVRNKAIRFWMDNRGVGQKDLYRLSKVLRHEFSFVKALNSSACQASIERAYSSI
ARFYDNCKKSVPGKKGYPQFKKNNRSVEYKTSGWSLSETRKQITFTDKKGIGKLNLKGTWNLNFYQLEQIKRVRLVRRAD
GYYVQFLISADNKVETQPTGKTIGLDVGLKEFYTDSNGHTEPNPKFYRTGEKRLKFRQRRVSRHQKGSTNRKKALNKLGR
VHLKISRQREEHAKRVARCVIQSHDLVAYEDLRVKNLVKNHCLAKSINDAGWYQFRKWLEYFGVKFGRITVAVNPAYTTS
QCSNCGAVVKKSLSTRTHVCECGFVMDRDWNAAINILKLALGTTGHVGTWIYDPNASGDSSSTHAGEILCEQVGSMNEES
PHL
>Mature_403_residues
MIVLEFKAKGKTTQYVAIDEAIRTCQFVRNKAIRFWMDNRGVGQKDLYRLSKVLRHEFSFVKALNSSACQASIERAYSSI
ARFYDNCKKSVPGKKGYPQFKKNNRSVEYKTSGWSLSETRKQITFTDKKGIGKLNLKGTWNLNFYQLEQIKRVRLVRRAD
GYYVQFLISADNKVETQPTGKTIGLDVGLKEFYTDSNGHTEPNPKFYRTGEKRLKFRQRRVSRHQKGSTNRKKALNKLGR
VHLKISRQREEHAKRVARCVIQSHDLVAYEDLRVKNLVKNHCLAKSINDAGWYQFRKWLEYFGVKFGRITVAVNPAYTTS
QCSNCGAVVKKSLSTRTHVCECGFVMDRDWNAAINILKLALGTTGHVGTWIYDPNASGDSSSTHAGEILCEQVGSMNEES
PHL

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=362, Percent_Identity=26.5193370165746, Blast_Score=108, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46104; Mature: 46104

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVLEFKAKGKTTQYVAIDEAIRTCQFVRNKAIRFWMDNRGVGQKDLYRLSKVLRHEFSF
CEEEEEECCCCCEEEEEHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
VKALNSSACQASIERAYSSIARFYDNCKKSVPGKKGYPQFKKNNRSVEYKTSGWSLSETR
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEEECCCCCHHHHH
KQITFTDKKGIGKLNLKGTWNLNFYQLEQIKRVRLVRRADGYYVQFLISADNKVETQPTG
HEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEECCCCC
KTIGLDVGLKEFYTDSNGHTEPNPKFYRTGEKRLKFRQRRVSRHQKGSTNRKKALNKLGR
CEEEEECCHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VHLKISRQREEHAKRVARCVIQSHDLVAYEDLRVKNLVKNHCLAKSINDAGWYQFRKWLE
EEEEEHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
YFGVKFGRITVAVNPAYTTSQCSNCGAVVKKSLSTRTHVCECGFVMDRDWNAAINILKLA
HHCCEEEEEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHEECCEEECCCCHHHHHHHHHH
LGTTGHVGTWIYDPNASGDSSSTHAGEILCEQVGSMNEESPHL
HCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MIVLEFKAKGKTTQYVAIDEAIRTCQFVRNKAIRFWMDNRGVGQKDLYRLSKVLRHEFSF
CEEEEEECCCCCEEEEEHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
VKALNSSACQASIERAYSSIARFYDNCKKSVPGKKGYPQFKKNNRSVEYKTSGWSLSETR
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCEEEECCCCCHHHHH
KQITFTDKKGIGKLNLKGTWNLNFYQLEQIKRVRLVRRADGYYVQFLISADNKVETQPTG
HEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEECCCCC
KTIGLDVGLKEFYTDSNGHTEPNPKFYRTGEKRLKFRQRRVSRHQKGSTNRKKALNKLGR
CEEEEECCHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VHLKISRQREEHAKRVARCVIQSHDLVAYEDLRVKNLVKNHCLAKSINDAGWYQFRKWLE
EEEEEHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
YFGVKFGRITVAVNPAYTTSQCSNCGAVVKKSLSTRTHVCECGFVMDRDWNAAINILKLA
HHCCEEEEEEEEECCCCCCHHHHCCHHHHHHHHHHHHHHEECCEEECCCCHHHHHHHHHH
LGTTGHVGTWIYDPNASGDSSSTHAGEILCEQVGSMNEESPHL
HCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]