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The map label for this gene is xynZ [H]

Identifier: 17231940

GI number: 17231940

Start: 5333786

End: 5334934

Strand: Direct

Name: xynZ [H]

Synonym: alr4448

Alternate gene names: 17231940

Gene position: 5333786-5334934 (Clockwise)

Preceding gene: 17231939

Following gene: 17231941

Centisome position: 83.16

GC content: 41.51

Gene sequence:

>1149_bases
ATGTTCCATCGGAGAAAATTCTTAAGGAGAGCAGGGTACACAACTCTATCTGCTTTCTTGACGATGGGGTTTTTACAAAG
GGATAAACAGAGGGATAGCCGTAGTACGGATATTGCCGCAATCAATACGAATTATCCCTTGCGGCAATTAGCTGCTGCCA
AAGGAAAACGCTATGGTGCAGCAGTTGACAGTGAAACTTTAAAAAAATATCCCGACTACGCGAAATTAATTGCCCGCGAA
TGTTCAATTGTGACACCCAACGGCGAATTAAAATGGAATGCCACTGAACCGCAGCCAGGATATTTTACTTTTGAAGCAGC
TGATGCGATCGCTAACTTCTGCCAAAAGCATAACCTGAAAATGCACGGGCATACCCTGTTCTGGAACATGGCAAAACCAG
ACTGGCTTCCTTATCCCCCCACCATACCCATGATCGAACGGCACTTTAACGGTGTGATGGGACATTATCGCAATAGTGAA
GTTTTAATATCTTGGGATATCGCTAATGAAATTATTGCCTACAGTGAAGATGAAGCTAAGGCCTCTACTTACGGCTTACA
TAAAGGTGTAAAACCAGAATTAATTCGAGATGTATTTTTAATCGCCGCTTCGATTGATAGCAGCAAGAAGTTTTACTTAA
ATGATTTCTCCATTGAAGGCGATACCTGGAAATCCAGGTATTTCCTAAAAATGATCGAGTATCTTAAGAATAATGGCGCG
AAGATAGATGGAGCAGGTATCCAGTCTCATCTGTGGTTTTCCACCAATTATCCTTTTGATGAAAAAGGATTTGTTGGTGT
TTTAAAAAGGCTCAAAGAACTGGAAGTTAAACCAGTAATTACCGAACTGGATATTATTATTGACACTCCTCTACCAGACA
CTATTGAAAAGCTCGATCAAATGGTAGCTGACTCTTATAAGCGATATCTTGACTTATGCTTCGCTAATGGAGTCGATACC
ATCATTACCTGGGGTATTACTGATCGTTATAGCTGGATACGTCACCCTGATTGGATGCCCCAAAAATTTAAGGCAAATCC
CAGCTACCATAAGTTTTTGCGTCCACTTCCCTACGACGAGAATCTGAAACCTAAACTTGCTCGTAAAGCGATCGCCCAAG
CCTTCATAAAGGCTACTTCTTCAAGATGA

Upstream 100 bases:

>100_bases
ACATTTGTTTTTCTATATTTCATCAGTATAATTACTCTAAAAACTTTAAAACTTTAATGTGCAATATAATAACTCCTGTA
TTTTCTATTAGGTATTATTT

Downstream 100 bases:

>100_bases
CTCAAATAGGTGCTATGTATTTGCTAGATAATAGCCTTCGCAAAAGCAGCTTCTTCAAATCCATGCAAATAGGTACTGCT
TATTTGCTAGATAGTAGCTT

Product: endo-1,4-beta-xylanase

Products: NA

Alternate protein names: Xylanase Z; 1,4-beta-D-xylan xylanohydrolase Z [H]

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MFHRRKFLRRAGYTTLSAFLTMGFLQRDKQRDSRSTDIAAINTNYPLRQLAAAKGKRYGAAVDSETLKKYPDYAKLIARE
CSIVTPNGELKWNATEPQPGYFTFEAADAIANFCQKHNLKMHGHTLFWNMAKPDWLPYPPTIPMIERHFNGVMGHYRNSE
VLISWDIANEIIAYSEDEAKASTYGLHKGVKPELIRDVFLIAASIDSSKKFYLNDFSIEGDTWKSRYFLKMIEYLKNNGA
KIDGAGIQSHLWFSTNYPFDEKGFVGVLKRLKELEVKPVITELDIIIDTPLPDTIEKLDQMVADSYKRYLDLCFANGVDT
IITWGITDRYSWIRHPDWMPQKFKANPSYHKFLRPLPYDENLKPKLARKAIAQAFIKATSSR

Sequences:

>Translated_382_residues
MFHRRKFLRRAGYTTLSAFLTMGFLQRDKQRDSRSTDIAAINTNYPLRQLAAAKGKRYGAAVDSETLKKYPDYAKLIARE
CSIVTPNGELKWNATEPQPGYFTFEAADAIANFCQKHNLKMHGHTLFWNMAKPDWLPYPPTIPMIERHFNGVMGHYRNSE
VLISWDIANEIIAYSEDEAKASTYGLHKGVKPELIRDVFLIAASIDSSKKFYLNDFSIEGDTWKSRYFLKMIEYLKNNGA
KIDGAGIQSHLWFSTNYPFDEKGFVGVLKRLKELEVKPVITELDIIIDTPLPDTIEKLDQMVADSYKRYLDLCFANGVDT
IITWGITDRYSWIRHPDWMPQKFKANPSYHKFLRPLPYDENLKPKLARKAIAQAFIKATSSR
>Mature_382_residues
MFHRRKFLRRAGYTTLSAFLTMGFLQRDKQRDSRSTDIAAINTNYPLRQLAAAKGKRYGAAVDSETLKKYPDYAKLIARE
CSIVTPNGELKWNATEPQPGYFTFEAADAIANFCQKHNLKMHGHTLFWNMAKPDWLPYPPTIPMIERHFNGVMGHYRNSE
VLISWDIANEIIAYSEDEAKASTYGLHKGVKPELIRDVFLIAASIDSSKKFYLNDFSIEGDTWKSRYFLKMIEYLKNNGA
KIDGAGIQSHLWFSTNYPFDEKGFVGVLKRLKELEVKPVITELDIIIDTPLPDTIEKLDQMVADSYKRYLDLCFANGVDT
IITWGITDRYSWIRHPDWMPQKFKANPSYHKFLRPLPYDENLKPKLARKAIAQAFIKATSSR

Specific function: Unknown

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR016134
- InterPro:   IPR002105
- InterPro:   IPR006584
- InterPro:   IPR018242
- InterPro:   IPR018247
- InterPro:   IPR000801
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF03422 CBM_6; PF00404 Dockerin_1; PF00756 Esterase; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 44046; Mature: 44046

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHRRKFLRRAGYTTLSAFLTMGFLQRDKQRDSRSTDIAAINTNYPLRQLAAAKGKRYGA
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCCCC
AVDSETLKKYPDYAKLIARECSIVTPNGELKWNATEPQPGYFTFEAADAIANFCQKHNLK
CCCHHHHHHCCHHHHHHHHHCCEECCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHCCCE
MHGHTLFWNMAKPDWLPYPPTIPMIERHFNGVMGHYRNSEVLISWDIANEIIAYSEDEAK
ECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCHHH
ASTYGLHKGVKPELIRDVFLIAASIDSSKKFYLNDFSIEGDTWKSRYFLKMIEYLKNNGA
HHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCC
KIDGAGIQSHLWFSTNYPFDEKGFVGVLKRLKELEVKPVITELDIIIDTPLPDTIEKLDQ
EEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHH
MVADSYKRYLDLCFANGVDTIITWGITDRYSWIRHPDWMPQKFKANPSYHKFLRPLPYDE
HHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHCCCCCCCHHHCCCCCHHHHHCCCCCCC
NLKPKLARKAIAQAFIKATSSR
CCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFHRRKFLRRAGYTTLSAFLTMGFLQRDKQRDSRSTDIAAINTNYPLRQLAAAKGKRYGA
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCCCC
AVDSETLKKYPDYAKLIARECSIVTPNGELKWNATEPQPGYFTFEAADAIANFCQKHNLK
CCCHHHHHHCCHHHHHHHHHCCEECCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHCCCE
MHGHTLFWNMAKPDWLPYPPTIPMIERHFNGVMGHYRNSEVLISWDIANEIIAYSEDEAK
ECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCHHH
ASTYGLHKGVKPELIRDVFLIAASIDSSKKFYLNDFSIEGDTWKSRYFLKMIEYLKNNGA
HHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCC
KIDGAGIQSHLWFSTNYPFDEKGFVGVLKRLKELEVKPVITELDIIIDTPLPDTIEKLDQ
EEECCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHH
MVADSYKRYLDLCFANGVDTIITWGITDRYSWIRHPDWMPQKFKANPSYHKFLRPLPYDE
HHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHCCCCCCCHHHCCCCCHHHHHCCCCCCC
NLKPKLARKAIAQAFIKATSSR
CCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3139632; 7664125 [H]