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The map label for this gene is cydA [H]

Identifier: 17231516

GI number: 17231516

Start: 4845556

End: 4846998

Strand: Reverse

Name: cydA [H]

Synonym: all4024

Alternate gene names: 17231516

Gene position: 4846998-4845556 (Counterclockwise)

Preceding gene: 17231517

Following gene: 17231515

Centisome position: 75.57

GC content: 47.12

Gene sequence:

>1443_bases
ATGGATTTTATATCGGACACCGTTGCTCTATCGCGGATGCAGTTTGCACTGACGGCGATTTTTCATATGCTATGGCCTGT
TCTCACCACGGGGATGGGAATTTATCTGGTCATTGTCGAAGGAATGTGGCTAAAAACACGCAATCCTGATTACTACCACC
ATGCTCGTTTCTGGGCCAAGCTATATGTGTTGAATTTCGGGATTGGTGTAGCATCTGGCTTACCAATGGAGTTTCAATTT
GGTACGAACTGGGCCCCGTTTTCCGAAGCAGTAGGCGACTTTTTTGGCAGCATTTTAGGCTTTGAGGCTTCGATGGCATT
CATGCTAGAAGCCGGATTTCTGGGTATTATGCTGTTTGGCTGGGAAAGAGTAAACCCAGTGATTCACTATTTTGCCACGA
TTATGGTTGCCTTTGGTGCAAACCTATCTACCTTCTGGATTTTAGCGGCAAACTCTTGGTTGCAGACCCCAGCCGGCGGG
GAAATAGTGAACGGGAAATTTGTTGTTGATGATTACTTTCAGGCAATTTTAAACCCCTTCATGGTCAACAGTGTCTCCCA
TATGTTTTTAGGGACGCTGGAAACTTCTTTGTTTGTGATTGGGGGAATTAGCGCCTGGTATATTCTCAACAACCGCCATC
AAGCTTTCTTTGCGCGATCGCTCAAAATTGCCCTAGCAACAGCGATCGCTGTCACCCCATTACAAATCTATGTCGGACAC
CTCAGCGCTGAACAGGTAGCTGACTATCAGCCTACCAAACTAGCAGCAATGGAAGCCAAGTGGGAAACCTCTCCAGCCGG
AGAACCTGCGCCCTGGAGTGTAGTTGCATTACCCAATAATCAGACTGAGCAAAATGACTGGGAAATCTCAATTCCCAACG
GCTTAGGCTACATTTTGGAATTCAAAAAAAATCTGTCTAAACCCGTTCTGGGACTGAAAGAGTGGAAACCTGAAGATCGC
CCCCGGATGGTGGGTTTGATTTATTATTCCTTCCGCATCATGAGTGGTATCGGCTTTTTCTTGGCTGGCTTGATGGGTAT
CAGTGTGATTCAATGGTTGCGGGGTAAACTTTCACCAGAAGCGATCGCCCAGCAAAAATGGCTACTGCGAATTTGGATTT
TAGCGGCTCCATTGGGCTACATTGCCGTGGAATCAGGCTGGATTGTGCGCTGTGTTGGGCGACAACCTTGGGTAGTTTAT
GGGAAAATTCGCACAGCAGATGGCGTTTCCCACCTACCGGCGACTGAGGTTTTAACATCCTTGCTAATTTTTGCAGGAAT
TTATACAGCCCTGTTTATTTGTGCCTTATTCTTTGGTAGTCGGATTATTCGTCAAGGCCCCAACCTAGAGCTTCCCGTTC
CAGGTATTGACACCCAACCAGGCGTAGAAACGACTCCGGCTGAATTTGTTCCAGATCAACGTCCTGTGGAAGCACAGCAG
TAA

Upstream 100 bases:

>100_bases
GAAAAACTTTTCGGTTTACTGAGAAATGTTCCGTTACCATGCGACTATGACCCCAAGATGCTACGCCAGTCAAGATTTAA
ACAAATTCAGAGGTTAGTTG

Downstream 100 bases:

>100_bases
ATCAATTCGCAATAGCCTGCGGCAAGGCTAACGCCAACGCAATTTGCAATAAAGAGTGCTGTGTATGGTAAATCAATAGG
TAATTGTATGGAGAATTTAG

Product: cytochrome D ubiquinol oxidase chain I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MDFISDTVALSRMQFALTAIFHMLWPVLTTGMGIYLVIVEGMWLKTRNPDYYHHARFWAKLYVLNFGIGVASGLPMEFQF
GTNWAPFSEAVGDFFGSILGFEASMAFMLEAGFLGIMLFGWERVNPVIHYFATIMVAFGANLSTFWILAANSWLQTPAGG
EIVNGKFVVDDYFQAILNPFMVNSVSHMFLGTLETSLFVIGGISAWYILNNRHQAFFARSLKIALATAIAVTPLQIYVGH
LSAEQVADYQPTKLAAMEAKWETSPAGEPAPWSVVALPNNQTEQNDWEISIPNGLGYILEFKKNLSKPVLGLKEWKPEDR
PRMVGLIYYSFRIMSGIGFFLAGLMGISVIQWLRGKLSPEAIAQQKWLLRIWILAAPLGYIAVESGWIVRCVGRQPWVVY
GKIRTADGVSHLPATEVLTSLLIFAGIYTALFICALFFGSRIIRQGPNLELPVPGIDTQPGVETTPAEFVPDQRPVEAQQ

Sequences:

>Translated_480_residues
MDFISDTVALSRMQFALTAIFHMLWPVLTTGMGIYLVIVEGMWLKTRNPDYYHHARFWAKLYVLNFGIGVASGLPMEFQF
GTNWAPFSEAVGDFFGSILGFEASMAFMLEAGFLGIMLFGWERVNPVIHYFATIMVAFGANLSTFWILAANSWLQTPAGG
EIVNGKFVVDDYFQAILNPFMVNSVSHMFLGTLETSLFVIGGISAWYILNNRHQAFFARSLKIALATAIAVTPLQIYVGH
LSAEQVADYQPTKLAAMEAKWETSPAGEPAPWSVVALPNNQTEQNDWEISIPNGLGYILEFKKNLSKPVLGLKEWKPEDR
PRMVGLIYYSFRIMSGIGFFLAGLMGISVIQWLRGKLSPEAIAQQKWLLRIWILAAPLGYIAVESGWIVRCVGRQPWVVY
GKIRTADGVSHLPATEVLTSLLIFAGIYTALFICALFFGSRIIRQGPNLELPVPGIDTQPGVETTPAEFVPDQRPVEAQQ
>Mature_480_residues
MDFISDTVALSRMQFALTAIFHMLWPVLTTGMGIYLVIVEGMWLKTRNPDYYHHARFWAKLYVLNFGIGVASGLPMEFQF
GTNWAPFSEAVGDFFGSILGFEASMAFMLEAGFLGIMLFGWERVNPVIHYFATIMVAFGANLSTFWILAANSWLQTPAGG
EIVNGKFVVDDYFQAILNPFMVNSVSHMFLGTLETSLFVIGGISAWYILNNRHQAFFARSLKIALATAIAVTPLQIYVGH
LSAEQVADYQPTKLAAMEAKWETSPAGEPAPWSVVALPNNQTEQNDWEISIPNGLGYILEFKKNLSKPVLGLKEWKPEDR
PRMVGLIYYSFRIMSGIGFFLAGLMGISVIQWLRGKLSPEAIAQQKWLLRIWILAAPLGYIAVESGWIVRCVGRQPWVVY
GKIRTADGVSHLPATEVLTSLLIFAGIYTALFICALFFGSRIIRQGPNLELPVPGIDTQPGVETTPAEFVPDQRPVEAQQ

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=508, Percent_Identity=35.6299212598425, Blast_Score=286, Evalue=1e-78,
Organism=Escherichia coli, GI1787212, Length=322, Percent_Identity=43.167701863354, Blast_Score=240, Evalue=2e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 53427; Mature: 53427

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFISDTVALSRMQFALTAIFHMLWPVLTTGMGIYLVIVEGMWLKTRNPDYYHHARFWAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCCCHHHHHHHHHH
LYVLNFGIGVASGLPMEFQFGTNWAPFSEAVGDFFGSILGFEASMAFMLEAGFLGIMLFG
HHHHEECCHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
WERVNPVIHYFATIMVAFGANLSTFWILAANSWLQTPAGGEIVNGKFVVDDYFQAILNPF
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHCCCCCCCEECCEEEHHHHHHHHHHHH
MVNSVSHMFLGTLETSLFVIGGISAWYILNNRHQAFFARSLKIALATAIAVTPLQIYVGH
HHHHHHHHHHHHHHHHEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC
LSAEQVADYQPTKLAAMEAKWETSPAGEPAPWSVVALPNNQTEQNDWEISIPNGLGYILE
CCHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCHHHHH
FKKNLSKPVLGLKEWKPEDRPRMVGLIYYSFRIMSGIGFFLAGLMGISVIQWLRGKLSPE
HHHHCCCCCCCHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AIAQQKWLLRIWILAAPLGYIAVESGWIVRCVGRQPWVVYGKIRTADGVSHLPATEVLTS
HHHHHHHHHHHHHHHCCCCCEEECCCCEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHH
LLIFAGIYTALFICALFFGSRIIRQGPNLELPVPGIDTQPGVETTPAEFVPDQRPVEAQQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure
MDFISDTVALSRMQFALTAIFHMLWPVLTTGMGIYLVIVEGMWLKTRNPDYYHHARFWAK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECCCCCHHHHHHHHHH
LYVLNFGIGVASGLPMEFQFGTNWAPFSEAVGDFFGSILGFEASMAFMLEAGFLGIMLFG
HHHHEECCHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
WERVNPVIHYFATIMVAFGANLSTFWILAANSWLQTPAGGEIVNGKFVVDDYFQAILNPF
HHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHCCCCCCCEECCEEEHHHHHHHHHHHH
MVNSVSHMFLGTLETSLFVIGGISAWYILNNRHQAFFARSLKIALATAIAVTPLQIYVGH
HHHHHHHHHHHHHHHHEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC
LSAEQVADYQPTKLAAMEAKWETSPAGEPAPWSVVALPNNQTEQNDWEISIPNGLGYILE
CCHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCHHHHH
FKKNLSKPVLGLKEWKPEDRPRMVGLIYYSFRIMSGIGFFLAGLMGISVIQWLRGKLSPE
HHHHCCCCCCCHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
AIAQQKWLLRIWILAAPLGYIAVESGWIVRCVGRQPWVVYGKIRTADGVSHLPATEVLTS
HHHHHHHHHHHHHHHCCCCCEEECCCCEEEEECCCCEEEEEEEECCCCCCCCCHHHHHHH
LLIFAGIYTALFICALFFGSRIIRQGPNLELPVPGIDTQPGVETTPAEFVPDQRPVEAQQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]