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The map label for this gene is ndhJ [H]

Identifier: 17231332

GI number: 17231332

Start: 4640596

End: 4641123

Strand: Reverse

Name: ndhJ [H]

Synonym: all3840

Alternate gene names: 17231332

Gene position: 4641123-4640596 (Counterclockwise)

Preceding gene: 17231333

Following gene: 17231331

Centisome position: 72.36

GC content: 47.73

Gene sequence:

>528_bases
GTGGCTGATGAAGAATTACAACCAGTACCCGCAGCAGAAGCCGCTATAGTTCCATCTGGGCCGACTTCCCAGTGGCTAAC
GGAAAATGGCTTTGCTCATGAATCTTTGGCAGCCGACAAAAACGGCGTGGAGATAATTAAAGTGGAGGCAGATTTCTTGC
TTCCCATCGCTACAGCCCTGTATGCTTACGGGTTTAATTATCTCCAGTTTCAAGGTGGTGTTGACCTTGGGCCAGGACAG
GATTTGGTTAGCGTGTATCACTTGGTGAAGGTGAGTGACAATGCTGATAAGCCTGAAGAAATCAGGGTGAAGGTGTTCTT
ACCACGGGAAAATCCGGTAGTTCCTTCGGTGTACTGGATTTGGAAAACCGCAGACTGGCAAGAACGCGAATCTTACGATA
TGTTCGGCATTATCTACGAAGGACACCCCAATTTGAAGCGGATTTTGATGCCGGAAGATTGGGTAGGTTGGCCTTTGCGG
AAGGATTACATTTCGCCTGATTTCTACGAATTGCAGGACGCTTATTAG

Upstream 100 bases:

>100_bases
GAGACTCGCTTCAACCCACCAAAAGAGTTGACAGAAGCGATCGGTCTTCCTGTTCCCCCAGCACTGCTGACATCACAAAC
CCAGAAGGAGGAACAAAAAC

Downstream 100 bases:

>100_bases
GCTGAGTACTAAGTGTCAGCTTGTGAGAATTTTCATATCTCATCTTTAACCCCTTTCCGGCGGCGGAGAGGGGTAATGTT
TTTTATACGCAAAGTGGCGC

Product: NADH dehydrogenase subunit J

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase subunit J; NADH-plastoquinone oxidoreductase subunit J; NDH-1 subunit J; NDH-J [H]

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MADEELQPVPAAEAAIVPSGPTSQWLTENGFAHESLAADKNGVEIIKVEADFLLPIATALYAYGFNYLQFQGGVDLGPGQ
DLVSVYHLVKVSDNADKPEEIRVKVFLPRENPVVPSVYWIWKTADWQERESYDMFGIIYEGHPNLKRILMPEDWVGWPLR
KDYISPDFYELQDAY

Sequences:

>Translated_175_residues
MADEELQPVPAAEAAIVPSGPTSQWLTENGFAHESLAADKNGVEIIKVEADFLLPIATALYAYGFNYLQFQGGVDLGPGQ
DLVSVYHLVKVSDNADKPEEIRVKVFLPRENPVVPSVYWIWKTADWQERESYDMFGIIYEGHPNLKRILMPEDWVGWPLR
KDYISPDFYELQDAY
>Mature_174_residues
ADEELQPVPAAEAAIVPSGPTSQWLTENGFAHESLAADKNGVEIIKVEADFLLPIATALYAYGFNYLQFQGGVDLGPGQD
LVSVYHLVKVSDNADKPEEIRVKVFLPRENPVVPSVYWIWKTADWQERESYDMFGIIYEGHPNLKRILMPEDWVGWPLRK
DYISPDFYELQDAY

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG0852

COG function: function code C; NADH:ubiquinone oxidoreductase 27 kD subunit

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I 30 kDa subunit family [H]

Homologues:

Organism=Homo sapiens, GI4758788, Length=136, Percent_Identity=32.3529411764706, Blast_Score=64, Evalue=5e-11,
Organism=Escherichia coli, GI145693162, Length=86, Percent_Identity=45.3488372093023, Blast_Score=86, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32563621, Length=112, Percent_Identity=34.8214285714286, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71990788, Length=112, Percent_Identity=34.8214285714286, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010218
- InterPro:   IPR001268
- InterPro:   IPR020396
- ProDom:   PD001581 [H]

Pfam domain/function: PF00329 Complex1_30kDa [H]

EC number: 1.6.5.3

Molecular weight: Translated: 19894; Mature: 19762

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: PS00542 COMPLEX1_30K

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADEELQPVPAAEAAIVPSGPTSQWLTENGFAHESLAADKNGVEIIKVEADFLLPIATAL
CCCCCCCCCCCCCEEEECCCCCCCHHCCCCCCCHHHCCCCCCCEEEEEECCHHHHHHHHH
YAYGFNYLQFQGGVDLGPGQDLVSVYHLVKVSDNADKPEEIRVKVFLPRENPVVPSVYWI
HHHCCCEEEEECCCCCCCCHHHHHHHHEEEECCCCCCCCEEEEEEEECCCCCCCCEEEEE
WKTADWQERESYDMFGIIYEGHPNLKRILMPEDWVGWPLRKDYISPDFYELQDAY
EECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHCCCCCCHHHHCCCC
>Mature Secondary Structure 
ADEELQPVPAAEAAIVPSGPTSQWLTENGFAHESLAADKNGVEIIKVEADFLLPIATAL
CCCCCCCCCCCCEEEECCCCCCCHHCCCCCCCHHHCCCCCCCEEEEEECCHHHHHHHHH
YAYGFNYLQFQGGVDLGPGQDLVSVYHLVKVSDNADKPEEIRVKVFLPRENPVVPSVYWI
HHHCCCEEEEECCCCCCCCHHHHHHHHEEEECCCCCCCCEEEEEEEECCCCCCCCEEEEE
WKTADWQERESYDMFGIIYEGHPNLKRILMPEDWVGWPLRKDYISPDFYELQDAY
EECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCHHCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA