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The map label for this gene is apcD [H]

Identifier: 17231145

GI number: 17231145

Start: 4409048

End: 4409533

Strand: Reverse

Name: apcD [H]

Synonym: all3653

Alternate gene names: 17231145

Gene position: 4409533-4409048 (Counterclockwise)

Preceding gene: 17231148

Following gene: 17231144

Centisome position: 68.75

GC content: 45.47

Gene sequence:

>486_bases
ATGACTGTAATTAGCCAAGTTATTCTCCAAGCCGACGACGAACTGCGTTATCCCAGCAGTGGCGAACTCAAGAGCATCAG
TGATTTTTTACAAACTGGTGTCCAAAGAACAAGAATCGTCGCTACCTTAGCGGAAAACGAGAAGAAAATTGTTCAGGAAG
CCACCAAACAACTTTGGCAGAAACGTCCTGATTTTATCGCACCTGGTGGCAACGCTTATGGCGAACGTCAGCGTGCGTTG
TGTATCCGTGACTTTGGCTGGTACTTACGCCTAATTACCTATGGCGTACTAGCCGGAGACATAGAACCAATAGAAAAAAT
CGGCATCATTGGTGTGCGGGAAATGTACAATTCTTTGGGCGTTCCTGTACCCGGAATGGTAGAAGCCATCAATTCTCTGA
AAAAAGCCTCTCTTGATTTATTAAGTTCAGAAGACGCAGCAGCTGCTGCACCTTACTTTGACTACATCATTCAGGCAATG
TCCTAG

Upstream 100 bases:

>100_bases
AGTAGTTCTTCTCTTTGTCTCCCCATTCCTCCAGCCCCTTCACTTCTGTACCTCCAACTCGTTAAACTAGCAAATAATAT
TTCGCGTGATTTAAATAATC

Downstream 100 bases:

>100_bases
TACAAAGCCTGTGCTAGTTTTAGGGGCGCTTCTGGTTTACTAAATTGAGTCTTAGGTAATAACCTCATCAATCCATAAGA
TTCTCATTTGATCATAACCT

Product: allophycocyanin B alpha chain

Products: NA

Alternate protein names: Allophycocyanin gamma chain [H]

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTVISQVILQADDELRYPSSGELKSISDFLQTGVQRTRIVATLAENEKKIVQEATKQLWQKRPDFIAPGGNAYGERQRAL
CIRDFGWYLRLITYGVLAGDIEPIEKIGIIGVREMYNSLGVPVPGMVEAINSLKKASLDLLSSEDAAAAAPYFDYIIQAM
S

Sequences:

>Translated_161_residues
MTVISQVILQADDELRYPSSGELKSISDFLQTGVQRTRIVATLAENEKKIVQEATKQLWQKRPDFIAPGGNAYGERQRAL
CIRDFGWYLRLITYGVLAGDIEPIEKIGIIGVREMYNSLGVPVPGMVEAINSLKKASLDLLSSEDAAAAAPYFDYIIQAM
S
>Mature_160_residues
TVISQVILQADDELRYPSSGELKSISDFLQTGVQRTRIVATLAENEKKIVQEATKQLWQKRPDFIAPGGNAYGERQRALC
IRDFGWYLRLITYGVLAGDIEPIEKIGIIGVREMYNSLGVPVPGMVEAINSLKKASLDLLSSEDAAAAAPYFDYIIQAMS

Specific function: Allophycocyanin is a photosynthetic bile pigment-protein complex with maximum absorption at approximately 650 nanometers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the core of the phycobilisome (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 17812; Mature: 17681

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVISQVILQADDELRYPSSGELKSISDFLQTGVQRTRIVATLAENEKKIVQEATKQLWQ
CHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRPDFIAPGGNAYGERQRALCIRDFGWYLRLITYGVLAGDIEPIEKIGIIGVREMYNSLG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
VPVPGMVEAINSLKKASLDLLSSEDAAAAAPYFDYIIQAMS
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVISQVILQADDELRYPSSGELKSISDFLQTGVQRTRIVATLAENEKKIVQEATKQLWQ
HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRPDFIAPGGNAYGERQRALCIRDFGWYLRLITYGVLAGDIEPIEKIGIIGVREMYNSLG
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
VPVPGMVEAINSLKKASLDLLSSEDAAAAAPYFDYIIQAMS
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3130540 [H]