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The map label for this gene is rtcB [H]

Identifier: 17231018

GI number: 17231018

Start: 4248850

End: 4250031

Strand: Reverse

Name: rtcB [H]

Synonym: all3526

Alternate gene names: 17231018

Gene position: 4250031-4248850 (Counterclockwise)

Preceding gene: 17231022

Following gene: 17231015

Centisome position: 66.26

GC content: 39.26

Gene sequence:

>1182_bases
ATGCCCTACGAAAAGTTAGAAATTGAAACACAAGCACCTGTATTATCTTGGGCAAATCATGAACTAGGTTCCGAAGAAAC
CAAGATGGCAAAAAACGTGGCATCGCTACCATTTGTATTTAAACACGTAGCACTAATGCCTGATGTTCATTTAGGAAAAG
GTGCTTTAGTTGGTTCTGTAATTGCGACTAAAGAAGCAATCATTCCTGCTGCTGTGGGCGTGGATATTGGTTGCGGTATG
AGTGCGATTAAAACACCATTTACTAGTGAACAATTAGAAGGAAAACTCAAAAAAATTCGCCTAGATATCGAAGCCGCAAT
TCCCACTGGTTTCAATGAAAATAAAGAAGTAGAAAAATCTGTGGCTAACTGGCAACGTTGGCGCGATTTTTCAGACTTAC
ATTCTGGTGTCCAAGACTTACAAACTAAAGCCATGAGACAAATGGGTTCTCTAGGCGGCGGGAATCACTTTTTAGAAGTT
TGTCTAGATACAGAAAACCAAGTTTGGTTAATGCTGCACTCTGGTTCACGCAATATTGGCAATCAACTTGCTCAATGTCA
TATTAGTACAGCAAAAGAATTAGCAAAACTAGCAGGTAATAAATTACCTGATCCTGATTTGGCTTATTTTATCGCTGGTA
CACCAGAATTTAAAGCATACTGGAACGATTTACAATGGGCGCAAGATTATGCCCGTGTTAACCGTGATGTGATGATGGCG
CGTTTTAAACGCATTGTTGAAAAACATATCGCTGGTGGCAAATTAACTAAACCTTTATTACAGGTAAATTGTCATCATAA
CTACGCCGAAAAGGAAGTACATTTTGACGAGAATGTGTATGTAACTCGTAAAGGTGCAGTCCGCGCTCAAACAGAAGATT
ATGGCATTATTCCTGGTTCAATGGGAGCAAAGTCTTTCATTGTTAAAGGTAAAGGTAACGCTCATAGTTTTTGTTCTTGC
TCTCATGGTGCTGGTCGTTTATTATCAAGAAGTAAGGCAAAAAATGTCTATACTCTTGATGATTTAATTGAGCAAACCAA
GGGCGTAGAGTGTCGTAAAGATACTGGTGTGTTAGATGAAATTCCTGGTGCTTATAAACCCATTGATCAAGTGATGGAAA
ATCAAGCAGACTTGGTTGAAGTTGTAGCTACACTCAAGCAAGTTGTTTGCGTGAAAGGGTAG

Upstream 100 bases:

>100_bases
AAAAAAACCAGTAAATCCTAATTTTTAATTTCTCACAAAACAATATGTAAAACTTTCCTTCCGATTACCAATTAACTATT
ACCTATTACCCATTAAAAAT

Downstream 100 bases:

>100_bases
AAGGCAGTACTGGTAGTGGTATGACGTTAGGAAACCCAACATTGGTTATAGCGTTGGGTTTCCCTGCGGGAAGGCTTCGC
CTACGCAAAGCCTCAACCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MPYEKLEIETQAPVLSWANHELGSEETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSVIATKEAIIPAAVGVDIGCGM
SAIKTPFTSEQLEGKLKKIRLDIEAAIPTGFNENKEVEKSVANWQRWRDFSDLHSGVQDLQTKAMRQMGSLGGGNHFLEV
CLDTENQVWLMLHSGSRNIGNQLAQCHISTAKELAKLAGNKLPDPDLAYFIAGTPEFKAYWNDLQWAQDYARVNRDVMMA
RFKRIVEKHIAGGKLTKPLLQVNCHHNYAEKEVHFDENVYVTRKGAVRAQTEDYGIIPGSMGAKSFIVKGKGNAHSFCSC
SHGAGRLLSRSKAKNVYTLDDLIEQTKGVECRKDTGVLDEIPGAYKPIDQVMENQADLVEVVATLKQVVCVKG

Sequences:

>Translated_393_residues
MPYEKLEIETQAPVLSWANHELGSEETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSVIATKEAIIPAAVGVDIGCGM
SAIKTPFTSEQLEGKLKKIRLDIEAAIPTGFNENKEVEKSVANWQRWRDFSDLHSGVQDLQTKAMRQMGSLGGGNHFLEV
CLDTENQVWLMLHSGSRNIGNQLAQCHISTAKELAKLAGNKLPDPDLAYFIAGTPEFKAYWNDLQWAQDYARVNRDVMMA
RFKRIVEKHIAGGKLTKPLLQVNCHHNYAEKEVHFDENVYVTRKGAVRAQTEDYGIIPGSMGAKSFIVKGKGNAHSFCSC
SHGAGRLLSRSKAKNVYTLDDLIEQTKGVECRKDTGVLDEIPGAYKPIDQVMENQADLVEVVATLKQVVCVKG
>Mature_392_residues
PYEKLEIETQAPVLSWANHELGSEETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSVIATKEAIIPAAVGVDIGCGMS
AIKTPFTSEQLEGKLKKIRLDIEAAIPTGFNENKEVEKSVANWQRWRDFSDLHSGVQDLQTKAMRQMGSLGGGNHFLEVC
LDTENQVWLMLHSGSRNIGNQLAQCHISTAKELAKLAGNKLPDPDLAYFIAGTPEFKAYWNDLQWAQDYARVNRDVMMAR
FKRIVEKHIAGGKLTKPLLQVNCHHNYAEKEVHFDENVYVTRKGAVRAQTEDYGIIPGSMGAKSFIVKGKGNAHSFCSCS
HGAGRLLSRSKAKNVYTLDDLIEQTKGVECRKDTGVLDEIPGAYKPIDQVMENQADLVEVVATLKQVVCVKG

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=439, Percent_Identity=25.0569476082005, Blast_Score=112, Evalue=7e-25,
Organism=Escherichia coli, GI2367224, Length=414, Percent_Identity=49.5169082125604, Blast_Score=392, Evalue=1e-110,
Organism=Caenorhabditis elegans, GI17506665, Length=436, Percent_Identity=25.9174311926606, Blast_Score=125, Evalue=3e-29,
Organism=Drosophila melanogaster, GI24585217, Length=444, Percent_Identity=23.1981981981982, Blast_Score=97, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 43331; Mature: 43200

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYEKLEIETQAPVLSWANHELGSEETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
CCCCCEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IATKEAIIPAAVGVDIGCGMSAIKTPFTSEQLEGKLKKIRLDIEAAIPTGFNENKEVEKS
HHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHH
VANWQRWRDFSDLHSGVQDLQTKAMRQMGSLGGGNHFLEVCLDTENQVWLMLHSGSRNIG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCHH
NQLAQCHISTAKELAKLAGNKLPDPDLAYFIAGTPEFKAYWNDLQWAQDYARVNRDVMMA
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
RFKRIVEKHIAGGKLTKPLLQVNCHHNYAEKEVHFDENVYVTRKGAVRAQTEDYGIIPGS
HHHHHHHHHCCCCCHHCHHHEEECCCCCHHCCEECCCCEEEEECCCEEECCCCCCCCCCC
MGAKSFIVKGKGNAHSFCSCSHGAGRLLSRSKAKNVYTLDDLIEQTKGVECRKDTGVLDE
CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHCCCCCCCCCCCHHH
IPGAYKPIDQVMENQADLVEVVATLKQVVCVKG
CCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PYEKLEIETQAPVLSWANHELGSEETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
CCCCEEECCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IATKEAIIPAAVGVDIGCGMSAIKTPFTSEQLEGKLKKIRLDIEAAIPTGFNENKEVEKS
HHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHH
VANWQRWRDFSDLHSGVQDLQTKAMRQMGSLGGGNHFLEVCLDTENQVWLMLHSGSRNIG
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCHH
NQLAQCHISTAKELAKLAGNKLPDPDLAYFIAGTPEFKAYWNDLQWAQDYARVNRDVMMA
HHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
RFKRIVEKHIAGGKLTKPLLQVNCHHNYAEKEVHFDENVYVTRKGAVRAQTEDYGIIPGS
HHHHHHHHHCCCCCHHCHHHEEECCCCCHHCCEECCCCEEEEECCCEEECCCCCCCCCCC
MGAKSFIVKGKGNAHSFCSCSHGAGRLLSRSKAKNVYTLDDLIEQTKGVECRKDTGVLDE
CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEHHHHHHHHCCCCCCCCCCCHHH
IPGAYKPIDQVMENQADLVEVVATLKQVVCVKG
CCCCCCHHHHHHHCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]