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The map label for this gene is rbn [C]

Identifier: 17230885

GI number: 17230885

Start: 4101132

End: 4102076

Strand: Direct

Name: rbn [C]

Synonym: alr3393

Alternate gene names: 17230885

Gene position: 4101132-4102076 (Clockwise)

Preceding gene: 17230882

Following gene: 17230886

Centisome position: 63.94

GC content: 39.37

Gene sequence:

>945_bases
ATGAATCGGCATCTTCCTAGAAGGGAGAATGGAGAAATGAACTTAAAAGCGATTTGGCAACTTTTCCAAGAGGCGTTTCA
AGAGTGGAATGATGATAAAGCCTCACGTTTAGCGGCTGCATTAGCTTACTATACGGTGTTTTCTATCGCACCTTTGTTGA
TTATTGTGATTGCGATCGCTGGTGCAGTATTTGGGGAAGAAGCTGCTAGGGGCGAAATTGTGCAGCAAATTCAAGGTTTA
GTAGGTAGAGATGGGGCAGAATTTATTGAAACTGCTATTCAAAATGTAGATAGGCCAAAGACAGGTACGATAGCTTCTCT
TATTAGTATTGCCCTTTTACTATTGGGTGCAACTGGTGTTTTTATCGAGTTACAGGACTCCCTCAACACCATTTGGGAAG
TACAACCAAAACCAGGACGCGGTGTCAAAAACATTTTTCGTCAACGTTTTTTATCTTTTGGCATGGTTTTAGGTATTGGC
TTTTTACTGTTAGTTTCTCTAGTAATTAGTACGGTATTATCAACGCTGGTTAATTATTTTGGTGGTTTACTACCGGGTGT
AGATTTCCTTTGGCAATTGGTTAACTTTATTATTTCTTTTGCCATTACTACGTTACTGTTTGCATTAATTTTCAAGGTTT
TGCCAGATGTCAGAATTACTTGGAATGATGTTTTAGTTGGCGCAATTCTTACCTCAATTTTATTTTCCATTGGTAGATTT
CTATTAGGACAATATTTAGGTAATGCTGGTTTTGGTTCAGCCTATGGCGCGGCTGGTTCTGTGGTATTAATCTTGGCTTG
GGTTTACTATACTGCCCAGATTCTCTTTTTCGGCGCTGAGTTTACCCAGGTTTATGCAAGAAAATATGGTAGACGCATTG
TTCCAACTCGTCACGCTATGCCTTTAAATGATACGAATTCTGGAAATCGGCATTATAGACGGTAG

Upstream 100 bases:

>100_bases
CTTCTGAGCTAAACGTGCCAAATTCTTCCTGAAGATAACCTCATAAGTACCCAGGGAAAGATGTCATTACTAGGAAAATC
AGTATCAAATATATCAGGGG

Downstream 100 bases:

>100_bases
GGCATGGGAAAGATAGGGGAGTCAATAATTAAAAATTACGAATTATTATGAATTGGTTTTCTATAAATTGGCACGCAATT
TTTGTACCTAGTATCAGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MNRHLPRRENGEMNLKAIWQLFQEAFQEWNDDKASRLAAALAYYTVFSIAPLLIIVIAIAGAVFGEEAARGEIVQQIQGL
VGRDGAEFIETAIQNVDRPKTGTIASLISIALLLLGATGVFIELQDSLNTIWEVQPKPGRGVKNIFRQRFLSFGMVLGIG
FLLLVSLVISTVLSTLVNYFGGLLPGVDFLWQLVNFIISFAITTLLFALIFKVLPDVRITWNDVLVGAILTSILFSIGRF
LLGQYLGNAGFGSAYGAAGSVVLILAWVYYTAQILFFGAEFTQVYARKYGRRIVPTRHAMPLNDTNSGNRHYRR

Sequences:

>Translated_314_residues
MNRHLPRRENGEMNLKAIWQLFQEAFQEWNDDKASRLAAALAYYTVFSIAPLLIIVIAIAGAVFGEEAARGEIVQQIQGL
VGRDGAEFIETAIQNVDRPKTGTIASLISIALLLLGATGVFIELQDSLNTIWEVQPKPGRGVKNIFRQRFLSFGMVLGIG
FLLLVSLVISTVLSTLVNYFGGLLPGVDFLWQLVNFIISFAITTLLFALIFKVLPDVRITWNDVLVGAILTSILFSIGRF
LLGQYLGNAGFGSAYGAAGSVVLILAWVYYTAQILFFGAEFTQVYARKYGRRIVPTRHAMPLNDTNSGNRHYRR
>Mature_314_residues
MNRHLPRRENGEMNLKAIWQLFQEAFQEWNDDKASRLAAALAYYTVFSIAPLLIIVIAIAGAVFGEEAARGEIVQQIQGL
VGRDGAEFIETAIQNVDRPKTGTIASLISIALLLLGATGVFIELQDSLNTIWEVQPKPGRGVKNIFRQRFLSFGMVLGIG
FLLLVSLVISTVLSTLVNYFGGLLPGVDFLWQLVNFIISFAITTLLFALIFKVLPDVRITWNDVLVGAILTSILFSIGRF
LLGQYLGNAGFGSAYGAAGSVVLILAWVYYTAQILFFGAEFTQVYARKYGRRIVPTRHAMPLNDTNSGNRHYRR

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=281, Percent_Identity=25.6227758007117, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 34767; Mature: 34767

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRHLPRRENGEMNLKAIWQLFQEAFQEWNDDKASRLAAALAYYTVFSIAPLLIIVIAIA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAVFGEEAARGEIVQQIQGLVGRDGAEFIETAIQNVDRPKTGTIASLISIALLLLGATGV
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH
FIELQDSLNTIWEVQPKPGRGVKNIFRQRFLSFGMVLGIGFLLLVSLVISTVLSTLVNYF
EEEEHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGLLPGVDFLWQLVNFIISFAITTLLFALIFKVLPDVRITWNDVLVGAILTSILFSIGRF
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHH
LLGQYLGNAGFGSAYGAAGSVVLILAWVYYTAQILFFGAEFTQVYARKYGRRIVPTRHAM
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PLNDTNSGNRHYRR
CCCCCCCCCCCCCC
>Mature Secondary Structure
MNRHLPRRENGEMNLKAIWQLFQEAFQEWNDDKASRLAAALAYYTVFSIAPLLIIVIAIA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GAVFGEEAARGEIVQQIQGLVGRDGAEFIETAIQNVDRPKTGTIASLISIALLLLGATGV
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHH
FIELQDSLNTIWEVQPKPGRGVKNIFRQRFLSFGMVLGIGFLLLVSLVISTVLSTLVNYF
EEEEHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGLLPGVDFLWQLVNFIISFAITTLLFALIFKVLPDVRITWNDVLVGAILTSILFSIGRF
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHH
LLGQYLGNAGFGSAYGAAGSVVLILAWVYYTAQILFFGAEFTQVYARKYGRRIVPTRHAM
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PLNDTNSGNRHYRR
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA