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The map label for this gene is ydcM [C]

Identifier: 17230864

GI number: 17230864

Start: 4081021

End: 4082145

Strand: Direct

Name: ydcM [C]

Synonym: alr3372

Alternate gene names: 17230864

Gene position: 4081021-4082145 (Clockwise)

Preceding gene: 17230862

Following gene: 17230868

Centisome position: 63.63

GC content: 38.67

Gene sequence:

>1125_bases
ATGAAAACCTTGAAGTTCAAACTGTACCAGCACAAAAGAAATAGATTTCTCAAACGCATGATTAATGCAGGTGGGGCAAT
CTACAACCATTGTATTGCTCTACATAAACGCTACTATCGTATGTGGGGCAAACACTTAAACTGTGCAAAACTTCAAGCTC
ATATTGCCAAACTGAGAAAGCGTAACCCATTTTGGCAAACAGTAGGTTCTCAGGCGGTACAAGATATTTGTCAACGCATT
GAGAAAGCCTACCAATTATTTTTTAAACACAACAAGAAGGGGGTTAGACCACCAGGATTTAAGAAGGTAAAAAAATACAA
ATCATTTACTCTAAAACAAGCAGGTTATAAGTTTTTGGATGGAAATAGAGTAAAAATTGGGAGTAAAATTTATCAGTTTT
GGAAGTCTAGAGAAATTGAGGGGACAGTCAAAACATTAACTATTAAACGCACACCATTAGGTGAGTTGTTTATGGTTGTG
GTGGTTGACGAAGGTAACAAGCCAGAAACCAAATTCATGACTGGTAAGATAGCGGGATTTGATTTCGGTTTAAAAACCTT
TCTCACTTGCTCAGACGGTACAACAATTGAGTCTCCCCAGTTTTTTAAGCAATCCCTAAATGCAATTAAAAAAGCCAGCC
GACAGCATTCTAAGAAATTAAAAGGTTCAGCCAATCGTGAGCAAGCTAGAAAGAACTTAGTACGCAGGTATGAAGATATC
TTTAACCGTCGTCGTGATTGGTTCTGGAAGTTAGCCCATGAGTTAACGGATAAATTTGATGTTCTCTGTTTTGAAACCTT
AAACCTTAAAGGAATGCAACGACTTTGGGGAAGGAAAATATCAGACTTGGCTTTTGGTGAATTACTGCAAATTCTAGAAT
GGGTTGCCAAAAACAAGAATAAACTGGTTGTTTTCATTGACCCGTGGTATCCCAGTAGCAAAACCTGCTCTAGCTGTGGA
CATATTTTAGAAAACCTAGATTTGTCAATTAGACGCTGGCGTTGTCCTTCATGTCAATCTGAAAATGATCGGGATGGAAA
CGCTAGTTTGAATATTAAAAGAGTCGGGAGTTCGACTCTAGGCGTAGGAGATGTTAGACAGTCCCAGACTGCAATCTCTG
TCTGA

Upstream 100 bases:

>100_bases
ATGAACAGTAGCCAATCCGATTGCGTGGTTGTAGTGATTATATACAGATTTCATGTAGATGAGTATTGATTATCTACACT
ACTAATGATATCATAACCAC

Downstream 100 bases:

>100_bases
TGCCTGAATCCCCCGTTTTCAAAACGGGGGAGTGGCTCAAGGCTTACCTCTGTCCACGAAACGCTACGCGTAAGCGTCCC
GTAGGGAACATAGAGAAGGA

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MKTLKFKLYQHKRNRFLKRMINAGGAIYNHCIALHKRYYRMWGKHLNCAKLQAHIAKLRKRNPFWQTVGSQAVQDICQRI
EKAYQLFFKHNKKGVRPPGFKKVKKYKSFTLKQAGYKFLDGNRVKIGSKIYQFWKSREIEGTVKTLTIKRTPLGELFMVV
VVDEGNKPETKFMTGKIAGFDFGLKTFLTCSDGTTIESPQFFKQSLNAIKKASRQHSKKLKGSANREQARKNLVRRYEDI
FNRRRDWFWKLAHELTDKFDVLCFETLNLKGMQRLWGRKISDLAFGELLQILEWVAKNKNKLVVFIDPWYPSSKTCSSCG
HILENLDLSIRRWRCPSCQSENDRDGNASLNIKRVGSSTLGVGDVRQSQTAISV

Sequences:

>Translated_374_residues
MKTLKFKLYQHKRNRFLKRMINAGGAIYNHCIALHKRYYRMWGKHLNCAKLQAHIAKLRKRNPFWQTVGSQAVQDICQRI
EKAYQLFFKHNKKGVRPPGFKKVKKYKSFTLKQAGYKFLDGNRVKIGSKIYQFWKSREIEGTVKTLTIKRTPLGELFMVV
VVDEGNKPETKFMTGKIAGFDFGLKTFLTCSDGTTIESPQFFKQSLNAIKKASRQHSKKLKGSANREQARKNLVRRYEDI
FNRRRDWFWKLAHELTDKFDVLCFETLNLKGMQRLWGRKISDLAFGELLQILEWVAKNKNKLVVFIDPWYPSSKTCSSCG
HILENLDLSIRRWRCPSCQSENDRDGNASLNIKRVGSSTLGVGDVRQSQTAISV
>Mature_374_residues
MKTLKFKLYQHKRNRFLKRMINAGGAIYNHCIALHKRYYRMWGKHLNCAKLQAHIAKLRKRNPFWQTVGSQAVQDICQRI
EKAYQLFFKHNKKGVRPPGFKKVKKYKSFTLKQAGYKFLDGNRVKIGSKIYQFWKSREIEGTVKTLTIKRTPLGELFMVV
VVDEGNKPETKFMTGKIAGFDFGLKTFLTCSDGTTIESPQFFKQSLNAIKKASRQHSKKLKGSANREQARKNLVRRYEDI
FNRRRDWFWKLAHELTDKFDVLCFETLNLKGMQRLWGRKISDLAFGELLQILEWVAKNKNKLVVFIDPWYPSSKTCSSCG
HILENLDLSIRRWRCPSCQSENDRDGNASLNIKRVGSSTLGVGDVRQSQTAISV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=374, Percent_Identity=23.2620320855615, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43501; Mature: 43501

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLKFKLYQHKRNRFLKRMINAGGAIYNHCIALHKRYYRMWGKHLNCAKLQAHIAKLRK
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
RNPFWQTVGSQAVQDICQRIEKAYQLFFKHNKKGVRPPGFKKVKKYKSFTLKQAGYKFLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEC
GNRVKIGSKIYQFWKSREIEGTVKTLTIKRTPLGELFMVVVVDEGNKPETKFMTGKIAGF
CCEEEHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEECEECCC
DFGLKTFLTCSDGTTIESPQFFKQSLNAIKKASRQHSKKLKGSANREQARKNLVRRYEDI
CCCHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FNRRRDWFWKLAHELTDKFDVLCFETLNLKGMQRLWGRKISDLAFGELLQILEWVAKNKN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
KLVVFIDPWYPSSKTCSSCGHILENLDLSIRRWRCPSCQSENDRDGNASLNIKRVGSSTL
EEEEEEECCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCC
GVGDVRQSQTAISV
CCCCHHHCHHHCCC
>Mature Secondary Structure
MKTLKFKLYQHKRNRFLKRMINAGGAIYNHCIALHKRYYRMWGKHLNCAKLQAHIAKLRK
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
RNPFWQTVGSQAVQDICQRIEKAYQLFFKHNKKGVRPPGFKKVKKYKSFTLKQAGYKFLD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEEC
GNRVKIGSKIYQFWKSREIEGTVKTLTIKRTPLGELFMVVVVDEGNKPETKFMTGKIAGF
CCEEEHHHHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEECEECCC
DFGLKTFLTCSDGTTIESPQFFKQSLNAIKKASRQHSKKLKGSANREQARKNLVRRYEDI
CCCHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FNRRRDWFWKLAHELTDKFDVLCFETLNLKGMQRLWGRKISDLAFGELLQILEWVAKNKN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
KLVVFIDPWYPSSKTCSSCGHILENLDLSIRRWRCPSCQSENDRDGNASLNIKRVGSSTL
EEEEEEECCCCCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCC
GVGDVRQSQTAISV
CCCCHHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]