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The map label for this gene is ybdK [C]

Identifier: 17230843

GI number: 17230843

Start: 4054079

End: 4055218

Strand: Direct

Name: ybdK [C]

Synonym: alr3351

Alternate gene names: 17230843

Gene position: 4054079-4055218 (Clockwise)

Preceding gene: 17230842

Following gene: 17230844

Centisome position: 63.21

GC content: 45.96

Gene sequence:

>1140_bases
GTGGTCTTATTGAAAGGCTTTGAAATCGAAATGTACACCGGTACGCCTCAAGGTGAAATCGTCGGCCTCTCGGATAAAAT
TGTGACTCAATTAGACGGGTTTGTACGAGAACCAGATAGCCGGAACGTAGAATACACAACAGATCCACTACACAGTTATG
AGAATTTGCTGTGTGCTTTGTTGCGACCTAGACGCGCATTAAGAGACTACCTCAAGCAATTAGGTGACTATACCCTCATT
CCTGGCAGTACGTTATCTTTGGGTAGAAGCGATCGCTTTTTTCGTTCCGACCCAGCCAACCCATATCATGACTATATTGA
GCAAACTTACGGCACAAAAGTAGTTACCGCTAGTGTTCATATAAACGTAGGCATTGACGATCCAGAAGTATTAATGCGGG
CTTGTCGATTAATTCGCGTCGAAGCACCCCTATTTTTAGCCTTAAGCGCCTCATCTCCCTTCATCGATGGTAAAGCCACA
GGTTATCACTCCACCCGTTGGGGTGTCTTCCCCCAAACCCCAACCAACGTCCCACTATTTACCAGCCACGCCCATCATAT
AGAGTGGGTAGAACAGCAATTGGCTATCGGGACAATGCAAAACGTCCGCCACCTGTGGGTATCAGTCAGACCAAATGGCG
ATCGCCGTCCCTATGATTTGAACCGTCTAGAATTAAGAATCTGTGATTTAGTTACAGATCCCATCTCCTTACTGGCAATT
ACAGCCTTACTAGAAGCGCGGCTATTACAACTAATAGAAAATCCCGACCTAGATCCCTTAACCCAAAGTAAGTTTTCTCC
CGAAGAACTTGTAACCCTCACCGCCAAAAACGAAGCAGCAGCCGCTAGCGCTAGTCTCGATGCCCAACTGACACATTGGC
AAGACGGTAGAAGCATCATAGCTAGAGATTGGGTGAATGAAATATATCAAGAAGTTTGGGCGATCGCTAAAAAACATGGC
TTTAGCTGTTTCCTCTCTCCCCTCCAGAAAATTTTACGTGAAGGTAACGAAGCCCAACACTGGTTACAGCTACATAAAGT
CGGCTTTGACACCCAATGCGTCATCACCCAAGCCATAAGTACCACCCAGGAACGAGAACTTGAACTACAAAATAAGTTGT
GTACCCAGCTAAAGGGGTAA

Upstream 100 bases:

>100_bases
ACGGTTCCATAATTCTTAACTTTAAATTTGCCCGAATGTCGATGTAAAGGATTGTCTAACTCGATACAATTTAAAGGCTG
GGAGAGCCGAGGAGAATAAA

Downstream 100 bases:

>100_bases
GTCGATAGTCAATAGTCAAAAGTTCAGAGTAAAAACAACCGACTATTGACCAAATTTTTTCCTTTTAAAATTCTAATCAA
CATAACTTAATGGAGAATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MVLLKGFEIEMYTGTPQGEIVGLSDKIVTQLDGFVREPDSRNVEYTTDPLHSYENLLCALLRPRRALRDYLKQLGDYTLI
PGSTLSLGRSDRFFRSDPANPYHDYIEQTYGTKVVTASVHINVGIDDPEVLMRACRLIRVEAPLFLALSASSPFIDGKAT
GYHSTRWGVFPQTPTNVPLFTSHAHHIEWVEQQLAIGTMQNVRHLWVSVRPNGDRRPYDLNRLELRICDLVTDPISLLAI
TALLEARLLQLIENPDLDPLTQSKFSPEELVTLTAKNEAAAASASLDAQLTHWQDGRSIIARDWVNEIYQEVWAIAKKHG
FSCFLSPLQKILREGNEAQHWLQLHKVGFDTQCVITQAISTTQERELELQNKLCTQLKG

Sequences:

>Translated_379_residues
MVLLKGFEIEMYTGTPQGEIVGLSDKIVTQLDGFVREPDSRNVEYTTDPLHSYENLLCALLRPRRALRDYLKQLGDYTLI
PGSTLSLGRSDRFFRSDPANPYHDYIEQTYGTKVVTASVHINVGIDDPEVLMRACRLIRVEAPLFLALSASSPFIDGKAT
GYHSTRWGVFPQTPTNVPLFTSHAHHIEWVEQQLAIGTMQNVRHLWVSVRPNGDRRPYDLNRLELRICDLVTDPISLLAI
TALLEARLLQLIENPDLDPLTQSKFSPEELVTLTAKNEAAAASASLDAQLTHWQDGRSIIARDWVNEIYQEVWAIAKKHG
FSCFLSPLQKILREGNEAQHWLQLHKVGFDTQCVITQAISTTQERELELQNKLCTQLKG
>Mature_379_residues
MVLLKGFEIEMYTGTPQGEIVGLSDKIVTQLDGFVREPDSRNVEYTTDPLHSYENLLCALLRPRRALRDYLKQLGDYTLI
PGSTLSLGRSDRFFRSDPANPYHDYIEQTYGTKVVTASVHINVGIDDPEVLMRACRLIRVEAPLFLALSASSPFIDGKAT
GYHSTRWGVFPQTPTNVPLFTSHAHHIEWVEQQLAIGTMQNVRHLWVSVRPNGDRRPYDLNRLELRICDLVTDPISLLAI
TALLEARLLQLIENPDLDPLTQSKFSPEELVTLTAKNEAAAASASLDAQLTHWQDGRSIIARDWVNEIYQEVWAIAKKHG
FSCFLSPLQKILREGNEAQHWLQLHKVGFDTQCVITQAISTTQERELELQNKLCTQLKG

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 42870; Mature: 42870

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLLKGFEIEMYTGTPQGEIVGLSDKIVTQLDGFVREPDSRNVEYTTDPLHSYENLLCAL
CEEEEEEEEEEEECCCCCCEEECHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHH
LRPRRALRDYLKQLGDYTLIPGSTLSLGRSDRFFRSDPANPYHDYIEQTYGTKVVTASVH
HHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEE
INVGIDDPEVLMRACRLIRVEAPLFLALSASSPFIDGKATGYHSTRWGVFPQTPTNVPLF
EEECCCCHHHHHHHHHHHEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
TSHAHHIEWVEQQLAIGTMQNVRHLWVSVRPNGDRRPYDLNRLELRICDLVTDPISLLAI
CCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHEEHHHHHHCHHHHHHH
TALLEARLLQLIENPDLDPLTQSKFSPEELVTLTAKNEAAAASASLDAQLTHWQDGRSII
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHEEEEEECCCHHHHHCCCCCEEEECCCCCHHH
ARDWVNEIYQEVWAIAKKHGFSCFLSPLQKILREGNEAQHWLQLHKVGFDTQCVITQAIS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
TTQERELELQNKLCTQLKG
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVLLKGFEIEMYTGTPQGEIVGLSDKIVTQLDGFVREPDSRNVEYTTDPLHSYENLLCAL
CEEEEEEEEEEEECCCCCCEEECHHHHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHH
LRPRRALRDYLKQLGDYTLIPGSTLSLGRSDRFFRSDPANPYHDYIEQTYGTKVVTASVH
HHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEEE
INVGIDDPEVLMRACRLIRVEAPLFLALSASSPFIDGKATGYHSTRWGVFPQTPTNVPLF
EEECCCCHHHHHHHHHHHEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
TSHAHHIEWVEQQLAIGTMQNVRHLWVSVRPNGDRRPYDLNRLELRICDLVTDPISLLAI
CCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHEEHHHHHHCHHHHHHH
TALLEARLLQLIENPDLDPLTQSKFSPEELVTLTAKNEAAAASASLDAQLTHWQDGRSII
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHEEEEEECCCHHHHHCCCCCEEEECCCCCHHH
ARDWVNEIYQEVWAIAKKHGFSCFLSPLQKILREGNEAQHWLQLHKVGFDTQCVITQAIS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHH
TTQERELELQNKLCTQLKG
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA