Click here to switch to the map view.

The map label for this gene is 17230395

Identifier: 17230395

GI number: 17230395

Start: 3543695

End: 3544513

Strand: Direct

Name: 17230395

Synonym: alr2903

Alternate gene names: NA

Gene position: 3543695-3544513 (Clockwise)

Preceding gene: 17230394

Following gene: 17230412

Centisome position: 55.25

GC content: 43.71

Gene sequence:

>819_bases
ATGACTTTTGGAAGAACTGAAGATTTGGTGTTAGTTGTTGGTGCGACTGGTGGAGTAGGACAAATTGTCGTGGGTAAGTT
ATTGGAGAAGGGTGCAAAGGTTCGCATCCTCACACGGAACGCCGAAAAAGCCAAAAAGCTGTTCAATGACAAAGTTGAGG
TTTTTGTAGGCGACATCCGCAAACCCAACACACTCCCAGCAGCAGTGGATCATGTCACCCACATTATATGTTGTACTGGA
ACTACAGCCTTTCCCTCTGCTAGATGGGAATTTGACCCAGAACCCAACTTGTTTGAATGGGGTAAAATTCTTCTAGATTC
TGACTATAGAGAAGCAACGGCAAAAAATACACCAGCCAAGGTTGATGCAGAGGGTGTGAGTAACTTAGTCGCCACCGCAC
CTAAAAATTTGAGCAGGTTTGTGTTTGTATCTTCCGTGGGGATTCTTCGCAAGGATCAGCCGCCTTTTAATATTTTGAAT
GCTTTCGGTGTGCTAGATGCCAAAAAAAAGGGAGAGGAAGCGATTATCAATTCTGGGTTACCTTATACCATCATTCGCCC
AGGACGCTTAATTGATGGCCCCTATACTTCCTATGACCTGAATACACTCCTGAAAGCTACCACAGGCGGTAAGCTAAATG
TAGTTATTGGCAAAGGTGACACCTTAGCAGGTGACGCGAGTAGAATTGATGTCGCCGCAGCTTGTGTGGAATCTATTTTT
TATTCAGCTAGTGAAGGACAGGTTTTTGAACTGGTCAATAAGGGAATAAGACCACCTACTATTGATTGGGAAACACTTTT
TTTACAATTACCCACTTAA

Upstream 100 bases:

>100_bases
ACATAACCACCGGGCTTTTGTCTGTGATATCCCCCTGTGGTAGCAAACAGCATACTCATATTTTTGAGTAAATTAAAAAT
AGGCTATCTCTAGGACAGTT

Downstream 100 bases:

>100_bases
AAAGGTGAATTAAGAATTAGTCTCACCACTAACCGCAATACATCCCCCAGCTAGTAAAAAAGCTAAAATCAACCCAATTA
GACCTGCAACTGGTGTAATT

Product: hypothetical protein

Products: NA

Alternate protein names: NmrA Family Protein; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; NmrA-Like Family; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase Family; Male Sterility-Like; Nmra-Like Family Protein; NAD-Dependent Epimerase/Dehydratase Family Protein; NmrA-Like; NAD Dependent Epimerase/Dehydratase Family Protein

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTFGRTEDLVLVVGATGGVGQIVVGKLLEKGAKVRILTRNAEKAKKLFNDKVEVFVGDIRKPNTLPAAVDHVTHIICCTG
TTAFPSARWEFDPEPNLFEWGKILLDSDYREATAKNTPAKVDAEGVSNLVATAPKNLSRFVFVSSVGILRKDQPPFNILN
AFGVLDAKKKGEEAIINSGLPYTIIRPGRLIDGPYTSYDLNTLLKATTGGKLNVVIGKGDTLAGDASRIDVAAACVESIF
YSASEGQVFELVNKGIRPPTIDWETLFLQLPT

Sequences:

>Translated_272_residues
MTFGRTEDLVLVVGATGGVGQIVVGKLLEKGAKVRILTRNAEKAKKLFNDKVEVFVGDIRKPNTLPAAVDHVTHIICCTG
TTAFPSARWEFDPEPNLFEWGKILLDSDYREATAKNTPAKVDAEGVSNLVATAPKNLSRFVFVSSVGILRKDQPPFNILN
AFGVLDAKKKGEEAIINSGLPYTIIRPGRLIDGPYTSYDLNTLLKATTGGKLNVVIGKGDTLAGDASRIDVAAACVESIF
YSASEGQVFELVNKGIRPPTIDWETLFLQLPT
>Mature_271_residues
TFGRTEDLVLVVGATGGVGQIVVGKLLEKGAKVRILTRNAEKAKKLFNDKVEVFVGDIRKPNTLPAAVDHVTHIICCTGT
TAFPSARWEFDPEPNLFEWGKILLDSDYREATAKNTPAKVDAEGVSNLVATAPKNLSRFVFVSSVGILRKDQPPFNILNA
FGVLDAKKKGEEAIINSGLPYTIIRPGRLIDGPYTSYDLNTLLKATTGGKLNVVIGKGDTLAGDASRIDVAAACVESIFY
SASEGQVFELVNKGIRPPTIDWETLFLQLPT

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29390; Mature: 29259

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFGRTEDLVLVVGATGGVGQIVVGKLLEKGAKVRILTRNAEKAKKLFNDKVEVFVGDIR
CCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEEEECCC
KPNTLPAAVDHVTHIICCTGTTAFPSARWEFDPEPNLFEWGKILLDSDYREATAKNTPAK
CCCCCHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHEEECCCHHHHHCCCCCCE
VDAEGVSNLVATAPKNLSRFVFVSSVGILRKDQPPFNILNAFGVLDAKKKGEEAIINSGL
ECHHHHHHHHHHCCCCHHEEEEEECCCCEECCCCCHHHHHHHHCCCCCCCCCHHHHCCCC
PYTIIRPGRLIDGPYTSYDLNTLLKATTGGKLNVVIGKGDTLAGDASRIDVAAACVESIF
CEEEECCCEEECCCCCCCCHHHHHEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
YSASEGQVFELVNKGIRPPTIDWETLFLQLPT
HCCCCCHHHHHHHCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure 
TFGRTEDLVLVVGATGGVGQIVVGKLLEKGAKVRILTRNAEKAKKLFNDKVEVFVGDIR
CCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCEEEEEECCC
KPNTLPAAVDHVTHIICCTGTTAFPSARWEFDPEPNLFEWGKILLDSDYREATAKNTPAK
CCCCCHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCHHHHHHEEECCCHHHHHCCCCCCE
VDAEGVSNLVATAPKNLSRFVFVSSVGILRKDQPPFNILNAFGVLDAKKKGEEAIINSGL
ECHHHHHHHHHHCCCCHHEEEEEECCCCEECCCCCHHHHHHHHCCCCCCCCCHHHHCCCC
PYTIIRPGRLIDGPYTSYDLNTLLKATTGGKLNVVIGKGDTLAGDASRIDVAAACVESIF
CEEEECCCEEECCCCCCCCHHHHHEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH
YSASEGQVFELVNKGIRPPTIDWETLFLQLPT
HCCCCCHHHHHHHCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA