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The map label for this gene is ylmH [H]

Identifier: 17230382

GI number: 17230382

Start: 3528549

End: 3529328

Strand: Direct

Name: ylmH [H]

Synonym: alr2890

Alternate gene names: 17230382

Gene position: 3528549-3529328 (Clockwise)

Preceding gene: 17230381

Following gene: 17230384

Centisome position: 55.02

GC content: 45.38

Gene sequence:

>780_bases
ATGTTGCCACGAGAAGAACTTTTAAAGGGTGTTGAAAATCGAGATAGTGTAGCTCGTGTAATTGATCAAGCAGAGCAAGC
TATTAAGACTTGGGAAGTGGTTGTGACAGATTTTTTGTCTCCGCCAGAGTTGGCAGAGATTCAACGGGTGTTTAGTCGGT
TAACAGACGTGCAGTTGGTGGCTTGGGGTGGATATCCGCAAGCAGAACGCCAAAGATTAGCGATCGCCCGTGCTGAGTTA
CCCTTAGATCAATCTCAAGTTAGTCTTTTGGTGCTTGAAATCGCTGGTAATTTCCTATTTGACTCGGCGACTCACCGCGA
TTTTTTAGGCGCAATGCTGGGAACGGGGATTGTCAGGGAGAAAACTGGCGATATTATTGTTCTGGGTGAACGGGGAGCGC
AAGCCATCGTTGTTCCAGAGTTGGCAGAATTTTTGCAAATTCATCTTAATCAGGTGCGTTCTGTTCCTGTAAAAACCCAA
CCCATTGAGCTAACTGAGTTAAAAGTTCGGGAACCGAAAAAGAAAGAATTGACTACAGTGGAAGCTTCTTTACGGTTAGA
TGCGATCGCCTCTGCTGGTTTTGGGATGTCCCGTAGTAAGATGGTAGACTTCATTGATTCCGGTGATGTCCGTGTCAATT
GGAAAGAAGTCACCCAAGCTAGTTCACAAGTAAAATCGGGTGACTTAATCGCCATTCGCGGTAAAGGACGCTTAGAAGTT
GGAGAAATTGCCGTGACGAAAAAAGAACGTTATCGCGTCCAACTCACCAGGTATATGTAA

Upstream 100 bases:

>100_bases
GGAAACTGGGGACTGGGGACTAAGGATTAGGTAAGTATCGGAAGATAACAACCGACAACCAACAACTGACAACTGACAAC
CGACAACCGACTATATAAAA

Downstream 100 bases:

>100_bases
GTTGACAGTTGACAGTTGATAACTAAGCTTTGAAATGTTTAGCTAAAAGACTAAGCAAAGTTTTGCGCGGCACAAGTCTA
GCCACATTGCTTCTCAGTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MLPREELLKGVENRDSVARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLVAWGGYPQAERQRLAIARAEL
PLDQSQVSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQ
PIELTELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEV
GEIAVTKKERYRVQLTRYM

Sequences:

>Translated_259_residues
MLPREELLKGVENRDSVARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLVAWGGYPQAERQRLAIARAEL
PLDQSQVSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQ
PIELTELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEV
GEIAVTKKERYRVQLTRYM
>Mature_259_residues
MLPREELLKGVENRDSVARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLVAWGGYPQAERQRLAIARAEL
PLDQSQVSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVREKTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQ
PIELTELKVREPKKKELTTVEASLRLDAIASAGFGMSRSKMVDFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEV
GEIAVTKKERYRVQLTRYM

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28876; Mature: 28876

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPREELLKGVENRDSVARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLV
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEE
AWGGYPQAERQRLAIARAELPLDQSQVSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVRE
EECCCCHHHHHHHHHHHHCCCCCCHHHHEEEEEECCCHHCCCCHHHHHHHHHHCCCCEEE
KTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQPIELTELKVREPKKKELTTV
CCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHH
EASLRLDAIASAGFGMSRSKMVDFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEV
HHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCEEEEECCCCEEE
GEIAVTKKERYRVQLTRYM
CCEEEECCCCEEEEEEECC
>Mature Secondary Structure
MLPREELLKGVENRDSVARVIDQAEQAIKTWEVVVTDFLSPPELAEIQRVFSRLTDVQLV
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEE
AWGGYPQAERQRLAIARAELPLDQSQVSLLVLEIAGNFLFDSATHRDFLGAMLGTGIVRE
EECCCCHHHHHHHHHHHHCCCCCCHHHHEEEEEECCCHHCCCCHHHHHHHHHHCCCCEEE
KTGDIIVLGERGAQAIVVPELAEFLQIHLNQVRSVPVKTQPIELTELKVREPKKKELTTV
CCCCEEEEECCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHH
EASLRLDAIASAGFGMSRSKMVDFIDSGDVRVNWKEVTQASSQVKSGDLIAIRGKGRLEV
HHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCEEEEECCCCEEE
GEIAVTKKERYRVQLTRYM
CCEEEECCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]