Click here to switch to the map view.

The map label for this gene is patA [H]

Identifier: 17230313

GI number: 17230313

Start: 3434680

End: 3436053

Strand: Reverse

Name: patA [H]

Synonym: all2821

Alternate gene names: 17230313

Gene position: 3436053-3434680 (Counterclockwise)

Preceding gene: 17230334

Following gene: 17230305

Centisome position: 53.57

GC content: 37.19

Gene sequence:

>1374_bases
ATGAAATATCACGGCACATTTACAGCACTAAGTCCTCAGGGTTTGTTAAGACATTTATCTAGTTGTTTTGACACCACTTG
TTTACAAGCTTTTAGCAACTCAGTCACTTGGTCAATTTACTTAGAAGATGGAACAATAACCTATGCAACTCATTCTGTAG
AACCATTCGATAGATTAGAACGCCATTTGCGCCGCCTCAGCCAACACTTTTCTCAAGTGACAAATGAAATTCGGGTGCAG
TTACGCTTGCTGTTTGAAATCGAAGCGCAAAATTCCAGCGATACTATTCATCTGCCTGATTACCAAGCTGTTAATTGGCT
TGTCGAGCAAGAATATTTAGATACTGCACAAGCCACGATGCTGATTCAAGAATTAGTTAAGGATGTAATTGAATCATTTC
TGTTAATTAAAAATGGCACTTATGAATTAAGTAATTCACAGGTGAAATTACCTGCAATTTGCCGACTTGATACAGTCAAG
GTAATGGAACGTTGTCAAATTAGACTACAAAATTGGCAATCTTACTTACCAAACATCACATCACCCTATCAACGTCCATA
TCTGTTGATTAACGGTAAAAATTCTCCAGAACTCCAGCCAAAATTGACTTACTGGATGAAGGGTTTCAGCCTGCGTCATC
TGGCTATAATTATGAATCAAGATGAAATCCAGTTAGCTCAAAATTTATATCCTTACATCCTCACCGGAGAGATTATATTA
CATGAACCAGATCCACCATTTGATCAATTACCCAAAATTCTAGCAGAATCAACATTAACTCCTAAATACACAACTGCATT
ACTGAGTAGAAAATTAGTAGATACAGTCGTAGAACTCAGTAGTAATGCTACGCCAATCACCCCAATTCTTGCAGTAGATA
ATTTAGCTCCTGTGGTGCGATTACCACAACCTTATACTCCTGCCAAAGCAAGCCATCAGGAACTAACATTATCAAATACC
ACAAATTCTATTCCGGAAAGAGTAATGCCTGCTACCGGAACTACTCGACAAGTTTATAAAATCGTTTCTGTAGATGATAG
TCCGACAATTCTCAAAGAAATTAGCTATTTCTTAGAAAGTGAGAATTTCACAGTAATTGCTATCAATGATCCGCTCAAGG
CTGCTATGTCAATTATCAGACATAAACCAGACTTGATTTTACTGGATCTGAATATGGCTGGTATTGATGGCTATGAATTG
TGTAGGATTATTCGCAATAATTCCATGTTTAAAAATACGCCGATTATATTCGTTACAAGTTATAAGGGATTAGTTGACAA
AGTCAGAGCCAGATTAGCTGGTGCATCTGGATATCTAACTAAACCTTTCACCCGTGCAGAGTTATTAAAGATTGTGTTTA
TGCACTTAGCTTAA

Upstream 100 bases:

>100_bases
CAGAAGAACCAAAAAAATATCCAAACATGATGAATATCTCATAGTAAAAGCTCCAAATCCGGACATAAATCTTGTATCTT
TTGACAAAGTAATTAACAAT

Downstream 100 bases:

>100_bases
TGAGTTTATATATAGGAATTGTTAATTAGTCAGGTTTTCTATCTGTTGACAAAAATGAAAGAGTTGACAATTTGTTGGTA
AGCTCTGCGATAAATTGCAT

Product: two-component response regulator

Products: NA

Alternate protein names: PAT-1 [H]

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MKYHGTFTALSPQGLLRHLSSCFDTTCLQAFSNSVTWSIYLEDGTITYATHSVEPFDRLERHLRRLSQHFSQVTNEIRVQ
LRLLFEIEAQNSSDTIHLPDYQAVNWLVEQEYLDTAQATMLIQELVKDVIESFLLIKNGTYELSNSQVKLPAICRLDTVK
VMERCQIRLQNWQSYLPNITSPYQRPYLLINGKNSPELQPKLTYWMKGFSLRHLAIIMNQDEIQLAQNLYPYILTGEIIL
HEPDPPFDQLPKILAESTLTPKYTTALLSRKLVDTVVELSSNATPITPILAVDNLAPVVRLPQPYTPAKASHQELTLSNT
TNSIPERVMPATGTTRQVYKIVSVDDSPTILKEISYFLESENFTVIAINDPLKAAMSIIRHKPDLILLDLNMAGIDGYEL
CRIIRNNSMFKNTPIIFVTSYKGLVDKVRARLAGASGYLTKPFTRAELLKIVFMHLA

Sequences:

>Translated_457_residues
MKYHGTFTALSPQGLLRHLSSCFDTTCLQAFSNSVTWSIYLEDGTITYATHSVEPFDRLERHLRRLSQHFSQVTNEIRVQ
LRLLFEIEAQNSSDTIHLPDYQAVNWLVEQEYLDTAQATMLIQELVKDVIESFLLIKNGTYELSNSQVKLPAICRLDTVK
VMERCQIRLQNWQSYLPNITSPYQRPYLLINGKNSPELQPKLTYWMKGFSLRHLAIIMNQDEIQLAQNLYPYILTGEIIL
HEPDPPFDQLPKILAESTLTPKYTTALLSRKLVDTVVELSSNATPITPILAVDNLAPVVRLPQPYTPAKASHQELTLSNT
TNSIPERVMPATGTTRQVYKIVSVDDSPTILKEISYFLESENFTVIAINDPLKAAMSIIRHKPDLILLDLNMAGIDGYEL
CRIIRNNSMFKNTPIIFVTSYKGLVDKVRARLAGASGYLTKPFTRAELLKIVFMHLA
>Mature_457_residues
MKYHGTFTALSPQGLLRHLSSCFDTTCLQAFSNSVTWSIYLEDGTITYATHSVEPFDRLERHLRRLSQHFSQVTNEIRVQ
LRLLFEIEAQNSSDTIHLPDYQAVNWLVEQEYLDTAQATMLIQELVKDVIESFLLIKNGTYELSNSQVKLPAICRLDTVK
VMERCQIRLQNWQSYLPNITSPYQRPYLLINGKNSPELQPKLTYWMKGFSLRHLAIIMNQDEIQLAQNLYPYILTGEIIL
HEPDPPFDQLPKILAESTLTPKYTTALLSRKLVDTVVELSSNATPITPILAVDNLAPVVRLPQPYTPAKASHQELTLSNT
TNSIPERVMPATGTTRQVYKIVSVDDSPTILKEISYFLESENFTVIAINDPLKAAMSIIRHKPDLILLDLNMAGIDGYEL
CRIIRNNSMFKNTPIIFVTSYKGLVDKVRARLAGASGYLTKPFTRAELLKIVFMHLA

Specific function: Controls heterocyst pattern formation. Required for the differentiation of intercalary heterocysts but not for terminal heterocysts [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1786599, Length=110, Percent_Identity=30.9090909090909, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 51958; Mature: 51958

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYHGTFTALSPQGLLRHLSSCFDTTCLQAFSNSVTWSIYLEDGTITYATHSVEPFDRLE
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHH
RHLRRLSQHFSQVTNEIRVQLRLLFEIEAQNSSDTIHLPDYQAVNWLVEQEYLDTAQATM
HHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
LIQELVKDVIESFLLIKNGTYELSNSQVKLPAICRLDTVKVMERCQIRLQNWQSYLPNIT
HHHHHHHHHHHHHHHHCCCCEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SPYQRPYLLINGKNSPELQPKLTYWMKGFSLRHLAIIMNQDEIQLAQNLYPYILTGEIIL
CCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEEEEECCHHHHHHHCCCCEEEECEEEE
HEPDPPFDQLPKILAESTLTPKYTTALLSRKLVDTVVELSSNATPITPILAVDNLAPVVR
ECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEE
LPQPYTPAKASHQELTLSNTTNSIPERVMPATGTTRQVYKIVSVDDSPTILKEISYFLES
CCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCHHHEEEEEECCCCHHHHHHHHHHHCC
ENFTVIAINDPLKAAMSIIRHKPDLILLDLNMAGIDGYELCRIIRNNSMFKNTPIIFVTS
CCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEEC
YKGLVDKVRARLAGASGYLTKPFTRAELLKIVFMHLA
CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKYHGTFTALSPQGLLRHLSSCFDTTCLQAFSNSVTWSIYLEDGTITYATHSVEPFDRLE
CCCCCEEEEECHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCCCHHHHHH
RHLRRLSQHFSQVTNEIRVQLRLLFEIEAQNSSDTIHLPDYQAVNWLVEQEYLDTAQATM
HHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
LIQELVKDVIESFLLIKNGTYELSNSQVKLPAICRLDTVKVMERCQIRLQNWQSYLPNIT
HHHHHHHHHHHHHHHHCCCCEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SPYQRPYLLINGKNSPELQPKLTYWMKGFSLRHLAIIMNQDEIQLAQNLYPYILTGEIIL
CCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEEEEEEECCHHHHHHHCCCCEEEECEEEE
HEPDPPFDQLPKILAESTLTPKYTTALLSRKLVDTVVELSSNATPITPILAVDNLAPVVR
ECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCEE
LPQPYTPAKASHQELTLSNTTNSIPERVMPATGTTRQVYKIVSVDDSPTILKEISYFLES
CCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCHHHEEEEEECCCCHHHHHHHHHHHCC
ENFTVIAINDPLKAAMSIIRHKPDLILLDLNMAGIDGYELCRIIRNNSMFKNTPIIFVTS
CCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEEEC
YKGLVDKVRARLAGASGYLTKPFTRAELLKIVFMHLA
CHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1608976; 11237320; 11759840 [H]