Click here to switch to the map view.

The map label for this gene is yjcF [C]

Identifier: 17229887

GI number: 17229887

Start: 2878415

End: 2879083

Strand: Reverse

Name: yjcF [C]

Synonym: all2395

Alternate gene names: 17229887

Gene position: 2879083-2878415 (Counterclockwise)

Preceding gene: 17229888

Following gene: 17229883

Centisome position: 44.89

GC content: 39.01

Gene sequence:

>669_bases
GTGAATAACATGAGAAATTTTGCTGAACCACAAGCATTACTCCTGAGTCAAATCAAAGATAAACTTTGTCAGCGTCGAGA
TTTTAATGGCTGTAATTTGAGTGGAATTGATTTAAGTACAGTTGATTTAAGTGGTGTTAACTTAATCGGAGCAGATTTAA
GTTTTGCCAATTTGTTTGGCTGTATTCTTACGGGTGCAAACCTGACTGGAGCAAACTTAATGCAGGCTAATTTGCGTGAG
GCTAAGTTGTATGAAGCTATTTTATCAGAAGCTAATTTGACAGATGCCGATTTAACACAAGCAAATTTGTGTGGAGCTTT
GTTATGGCGATCGCAATGCCGTAATATTAATCTTTGGGGTGCTTCTTTATGCGCGGCTGATTTACGTGAAGCTGACCTCA
CTCAAGGCACATTAGTAGAAGCATCTTTAATTGAGGGCAATTTATCCAGAGCCAATTTGACAGATGCAAAGTTATCTGGA
GCCACACTACTGGAAGCTAATTTAACAGAGGTCAACTTCACTAACACTGATCTGAGATGGGCAAATTTGACCAAAGCTAA
CTTAACTAATGCCAACCTAGAAGGAACAACAATAGCTTTCGCTAAATTACGCGATACCATTATGCCTGATGGCAAAATCT
GCAATCCCCAAATAGTGATTTGGGAATGA

Upstream 100 bases:

>100_bases
TTTTTTAGGAAAATTTTGCTATGTTCATTTAGCTCTCAGGGTGTAATCTCGTTATACAGTATCTTTCATAATAGTCTTGT
TCGCTCATTGACACTCGCAG

Downstream 100 bases:

>100_bases
TTTAAAACTCCCGGCGTGAAAAAAGGGAAATAGCGATCGCCAATAACATGGCAATATAAACAAAACCATAGACAGCATTA
CCCATGAGTGCGATCGTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNNMRNFAEPQALLLSQIKDKLCQRRDFNGCNLSGIDLSTVDLSGVNLIGADLSFANLFGCILTGANLTGANLMQANLRE
AKLYEAILSEANLTDADLTQANLCGALLWRSQCRNINLWGASLCAADLREADLTQGTLVEASLIEGNLSRANLTDAKLSG
ATLLEANLTEVNFTNTDLRWANLTKANLTNANLEGTTIAFAKLRDTIMPDGKICNPQIVIWE

Sequences:

>Translated_222_residues
MNNMRNFAEPQALLLSQIKDKLCQRRDFNGCNLSGIDLSTVDLSGVNLIGADLSFANLFGCILTGANLTGANLMQANLRE
AKLYEAILSEANLTDADLTQANLCGALLWRSQCRNINLWGASLCAADLREADLTQGTLVEASLIEGNLSRANLTDAKLSG
ATLLEANLTEVNFTNTDLRWANLTKANLTNANLEGTTIAFAKLRDTIMPDGKICNPQIVIWE
>Mature_222_residues
MNNMRNFAEPQALLLSQIKDKLCQRRDFNGCNLSGIDLSTVDLSGVNLIGADLSFANLFGCILTGANLTGANLMQANLRE
AKLYEAILSEANLTDADLTQANLCGALLWRSQCRNINLWGASLCAADLREADLTQGTLVEASLIEGNLSRANLTDAKLSG
ATLLEANLTEVNFTNTDLRWANLTKANLTNANLEGTTIAFAKLRDTIMPDGKICNPQIVIWE

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Escherichia coli, GI1790502, Length=174, Percent_Identity=26.4367816091954, Blast_Score=66, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221377802, Length=166, Percent_Identity=33.1325301204819, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 24035; Mature: 24035

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNMRNFAEPQALLLSQIKDKLCQRRDFNGCNLSGIDLSTVDLSGVNLIGADLSFANLFG
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEECCCHHHHHHH
CILTGANLTGANLMQANLREAKLYEAILSEANLTDADLTQANLCGALLWRSQCRNINLWG
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCH
ASLCAADLREADLTQGTLVEASLIEGNLSRANLTDAKLSGATLLEANLTEVNFTNTDLRW
HHHHHHHHHHHCCCCCCEEEEHHHCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCCEE
ANLTKANLTNANLEGTTIAFAKLRDTIMPDGKICNPQIVIWE
EECCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCEEEEEC
>Mature Secondary Structure
MNNMRNFAEPQALLLSQIKDKLCQRRDFNGCNLSGIDLSTVDLSGVNLIGADLSFANLFG
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEECCCHHHHHHH
CILTGANLTGANLMQANLREAKLYEAILSEANLTDADLTQANLCGALLWRSQCRNINLWG
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCH
ASLCAADLREADLTQGTLVEASLIEGNLSRANLTDAKLSGATLLEANLTEVNFTNTDLRW
HHHHHHHHHHHCCCCCCEEEEHHHCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCCEE
ANLTKANLTNANLEGTTIAFAKLRDTIMPDGKICNPQIVIWE
EECCCCCCCCCCCCCCEEEHHHHHHHHCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA