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The map label for this gene is radC [C]

Identifier: 17229843

GI number: 17229843

Start: 2834049

End: 2834780

Strand: Direct

Name: radC [C]

Synonym: alr2351

Alternate gene names: 17229843

Gene position: 2834049-2834780 (Clockwise)

Preceding gene: 17229842

Following gene: 17229847

Centisome position: 44.19

GC content: 46.04

Gene sequence:

>732_bases
ATGACCTACTGCCTGAGAATTGCTGATATACCCACAAATGAGCGTCCCCGTGAACGGTTAATGACCCACGGGCCAAAAGT
TTTAGCCACAGCCGAATTAATCGCAATTCTTTTAGGCACTGGTCAAGGGCCTGGCAAACTCTCAGCCGTCGGTTTAGGGC
AATATCTGTTGCAGGAGTTGGGTAAAAATCAGCGTGACCCATTGGCAGTTTTGCGAGAAGTTACTCCGGCTGAGTTAATG
CAAATACCTGGAATTGGGCCAGCAAAGGCCACAAGTATATTAGCGGCGGTTGAATTGGGTAAACGCACCTTTCAATTCCG
TCCCTTAGATAAAACACCAATTGATAGTCCCGTGGCTGCGGTGGCGGCGCTGAGTCAAGATTTGATGTGGCAGAATCAAG
AACGCTTTGCCGTATTATTATTAGATGTTAAAAATCGCTTACTGGGAACACAGGTAATTACCATTGGCACAGCTACAGAA
ACTTTAGCTTCTCCGCGCGAAATTTTTCGAGAAATCATCCGCCAAGGTGCAACACGCACTATCGTTGCCCACAATCACCC
TTCAGGTAACGTGGAACCCAGCCCAGAAGATATAGAATTGACGCGCCAATTATTAGCAGGAGCGCAACTTTTAGGGATTC
CCTTGTTAGATCATTTGATTTTGGGCAATGGTAATCATCAAAGTTTACGGGAAATTACCACCTTGTGGAACGACTATCCT
CAAGGTGATTAA

Upstream 100 bases:

>100_bases
GCAAAAATTAAAAATTTTCTCAAGCTAGGGCAATTGTGAACGTAAACAAGGGATAACTAAAGATAGTTGCATCTACAGTG
ACTATTTTGTCAGTTATCCT

Downstream 100 bases:

>100_bases
ATCCAAAAATCAAATAGATGTCGTAACGATAATATTGAAGTTTGAATTGTTACTTACGAACTGTAACTGGTGGATTACCC
CAAATACTAATCCTGCCGTC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTYCLRIADIPTNERPRERLMTHGPKVLATAELIAILLGTGQGPGKLSAVGLGQYLLQELGKNQRDPLAVLREVTPAELM
QIPGIGPAKATSILAAVELGKRTFQFRPLDKTPIDSPVAAVAALSQDLMWQNQERFAVLLLDVKNRLLGTQVITIGTATE
TLASPREIFREIIRQGATRTIVAHNHPSGNVEPSPEDIELTRQLLAGAQLLGIPLLDHLILGNGNHQSLREITTLWNDYP
QGD

Sequences:

>Translated_243_residues
MTYCLRIADIPTNERPRERLMTHGPKVLATAELIAILLGTGQGPGKLSAVGLGQYLLQELGKNQRDPLAVLREVTPAELM
QIPGIGPAKATSILAAVELGKRTFQFRPLDKTPIDSPVAAVAALSQDLMWQNQERFAVLLLDVKNRLLGTQVITIGTATE
TLASPREIFREIIRQGATRTIVAHNHPSGNVEPSPEDIELTRQLLAGAQLLGIPLLDHLILGNGNHQSLREITTLWNDYP
QGD
>Mature_242_residues
TYCLRIADIPTNERPRERLMTHGPKVLATAELIAILLGTGQGPGKLSAVGLGQYLLQELGKNQRDPLAVLREVTPAELMQ
IPGIGPAKATSILAAVELGKRTFQFRPLDKTPIDSPVAAVAALSQDLMWQNQERFAVLLLDVKNRLLGTQVITIGTATET
LASPREIFREIIRQGATRTIVAHNHPSGNVEPSPEDIELTRQLLAGAQLLGIPLLDHLILGNGNHQSLREITTLWNDYPQ
GD

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=216, Percent_Identity=31.9444444444444, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI2367100, Length=90, Percent_Identity=41.1111111111111, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788997, Length=99, Percent_Identity=35.3535353535354, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788312, Length=93, Percent_Identity=38.7096774193548, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000445
- InterPro:   IPR003583
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466; PF00633 HHH [H]

EC number: NA

Molecular weight: Translated: 26489; Mature: 26358

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYCLRIADIPTNERPRERLMTHGPKVLATAELIAILLGTGQGPGKLSAVGLGQYLLQEL
CCEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
GKNQRDPLAVLREVTPAELMQIPGIGPAKATSILAAVELGKRTFQFRPLDKTPIDSPVAA
CCCCCCHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHEEECCCCCCCCCCHHHH
VAALSQDLMWQNQERFAVLLLDVKNRLLGTQVITIGTATETLASPREIFREIIRQGATRT
HHHHHHHHHHCCCCCEEEEEEEHHHHHHCCEEEEECCHHHHHCCHHHHHHHHHHCCCCEE
IVAHNHPSGNVEPSPEDIELTRQLLAGAQLLGIPLLDHLILGNGNHQSLREITTLWNDYP
EEEECCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
QGD
CCC
>Mature Secondary Structure 
TYCLRIADIPTNERPRERLMTHGPKVLATAELIAILLGTGQGPGKLSAVGLGQYLLQEL
CEEEEEECCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
GKNQRDPLAVLREVTPAELMQIPGIGPAKATSILAAVELGKRTFQFRPLDKTPIDSPVAA
CCCCCCHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCHHEEECCCCCCCCCCHHHH
VAALSQDLMWQNQERFAVLLLDVKNRLLGTQVITIGTATETLASPREIFREIIRQGATRT
HHHHHHHHHHCCCCCEEEEEEEHHHHHHCCEEEEECCHHHHHCCHHHHHHHHHHCCCCEE
IVAHNHPSGNVEPSPEDIELTRQLLAGAQLLGIPLLDHLILGNGNHQSLREITTLWNDYP
EEEECCCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
QGD
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA