| Definition | Nostoc sp. PCC 7120, complete genome. |
|---|---|
| Accession | NC_003272 |
| Length | 6,413,771 |
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The map label for this gene is clpB
Identifier: 17229814
GI number: 17229814
Start: 2796127
End: 2798769
Strand: Direct
Name: clpB
Synonym: alr2322
Alternate gene names: 17229814
Gene position: 2796127-2798769 (Clockwise)
Preceding gene: 17229813
Following gene: 17229815
Centisome position: 43.6
GC content: 45.37
Gene sequence:
>2643_bases ATGCAGCCTACAGATCCCAATAAATTTACTGATAAAGCCTGGGAAGTCATTGTCAAATCTCAGGATATAGTTCGTGCATA TCAACAACAACAACTAGACGTTGAACATTTAATTCTTGCTCTGATAGAAGATCCTACTAGTTTAGCTGTGCGGATTTTGG GTCGCGCAGAAATTGACCCGATTCGCTTACAACAGCAATTAGAAGCTTTTACCCAGCGTCAAACCAAAGTAGGCAAAAGT GACCAACTTTACCTCGGTCGTAGCTTGGATGTTATGCTTGACCGCGCCGAGGAAATTAGGGAGCGGATGAAGGATGGCTA CATTTCTGTAGAACATATGCTCCTAGCTTTTGTGGATGATGAACGTGTTGGTAGGAAGGTACTCAAAGGTTTTAATGTAG ACAGTGCCAAGATAGAAGCAAGTATCAAAGCCGTTCGTGGTAGCCAAAAAGTGACAGACCAAAACCCAGAATCCCGCTAT GAAGCATTACAGAAATTTGGTAGGGATTTAACAGAACAGGCAAAGTCGGGTAAGTTAGACCCAGTGATTGGACGAGATGA CGAAATTCGTCGGGTAATTCAGGTGTTATCTCGTCGGAGTAAAAATAATCCCGTCTTGATTGGTGAACCTGGGGTGGGTA AGACAGCGATCGCTGAAGCTTTGGCACAGCGTATAGTTAATGGGGATGTCCCGGAATCTCTGAAAAACCGTCAATTAATC TCTCTCGATATCGGTAGTTTGATTGCTGGGGCAAAATATCGGGGTGAATTTGAAGACCGATTAAAAGCCGTCCTCCGGGA AGTTACGGAATCAAACGGTAATATTGTATTATTTATTGATGAACTACATACCGTCGTCGGCACTGGTTCCAACCAACAAG GGGCAATGGATGCAGGTAACTTGCTCAAACCCATGCTGGCAAGGGGTGAGTTGCGGTGTATTGGGGCGACAACTTTAGAT GAGTTTCGTAAATTCATTGAAAAAGACGCAGCTTTAGAACGACGTTTTCAACAGGTGTACGTAGACCAACCGAGTGTGGA AAATACAATCTCCATTTTGCGCGGGTTGAAGGAACGCTACGAAGTCCATCACAATGTGAAAATTTCCGATTCCGCACTAG TAGCCGCAGCAACTTTATCAGCTCGTTACATTGCTGACCGCTTCCTACCAGATAAAGCCATTGATTTAGTCGATGAAGCC GCAGCCCAATTAAAAATGGAAATCACTTCCAAACCAGCAGACTTGGAAGCCATTGACCGCCGCTTGATGCAGCTAGAAAT GGAAAAGCTCTCCTTGGCGGGAGAGGAGAAAGTAGCAGCGCCTACTAAGGAACGTTTGCAGCGAATTGAGTTAGAAATCA CCAATTTAACTGAAAAACAGCAGGATTTAAACAATCAATGGCAAGGTGAAAAGCAGGTACTAGAAGCCATTAGTTTGTTA AAGAAAGAAGAAGACGCTTTAAGGGTGCAGATTGAGCAAGCAGAACGGGCTTACGATTTGAATAAAGCGGCGCAGTTGAA GTATGGCAAACTAGAAGGAGTACAGCGCGATCGCGAAGCTAAAGAAGCGAAACTCTTAGAACTACAAAGTCAAGGTTCTA CCTTGTTGCGTGAACAAGTCACCGAAGCCGACATCGCCGAAATCGTCGCTAAGTGGACAGGTATCCCCGTAAATCGTCTG TTGGAATCAGAACGGCAAAAACTCCTACAACTCGAAAGCCACTTACATCAACGGGTGATAGGACAACAGGAAGCCGTGGA AGCAGTATCAGCCGCTATTCGTCGCGCCCGTGCGGGAATGAAAGACCCCAACCGTCCCATCGGTTCATTTCTATTTATGG GGCCGACTGGTGTAGGTAAAACCGAACTCGCCCGCGCTTTAGCCCAGTTCCTCTTTGACGCTGATGATGCTTTGGTGCGC TTGGATATGTCTGAGTACATGGAAAAACATTCTGTCTCCCGCTTAGTTGGCGCGCCTCCTGGTTATGTAGGCTACGAAGA AGGTGGGCAACTTTCCGAAGCAGTCCGCCGACATCCTTATTCTGTGGTGTTATTGGATGAAGTCGAAAAAGCACACCCCG ATGTGTTCAATATTTTATTGCAAGTATTAGATGATGGGAGAATTACTGATTCCCAAGGCAGAACAGTAGATTTTCGTAAT ACCGTCATTGTCATGACCAGTAACATCGGTAGCGAACATATTTTAGACGTTTCCGGTGATGATACCCAGTATGAGACAAT GCGAAATCGGGTCATGGATGCCTTGCGATCGCACTTCCGCCCCGAATTTCTCAACCGTGTTGATGATACAATTCTTTTCC ACGCCCTCAGCCGTTCTGAGATGAGCCACATCATCCGCATTCAACTAAAACGAGTGGAAAGTCTCCTCAGAGATCAAAAA ATCTCCTTTGAAATCTCTCCAGCCGCCTGTGATTTCCTCGTAGAAAAAGGCTATGACCCAGTTTACGGCGCACGTCCCCT AAAACGAGCCATTCAGAGAGAAATCGAAAACCCCCTCGCCACCAAAATCTTAGAAAATACCTTTATCTCCGGTGACACCA TTTACATAGACCAAGATGAAAACGGTTTAAGTTTCACTAACAAAGCACCAGTAAAAGTTTCGGTAACACAAATCACAACC TAG
Upstream 100 bases:
>100_bases CATCTCATCTAAATTCCCGCAATATCTAATAAATTAGCCTTGAATCTCTTTTTATATACCTAGAATAAAAGTTTGGAATA TTACATTAAAAATCGTAAAG
Downstream 100 bases:
>100_bases CCAATTTTACAGAGACTGGTTTGATGATACCTCCCTCCGCGCCCCTCTGCGCTTACCTCAGCGCCCCTCAGCGTTTAAAT GATATGTAGGGAAATCCGAA
Product: endopeptidase Clp ATP-binding chain
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 880; Mature: 880
Protein sequence:
>880_residues MQPTDPNKFTDKAWEVIVKSQDIVRAYQQQQLDVEHLILALIEDPTSLAVRILGRAEIDPIRLQQQLEAFTQRQTKVGKS DQLYLGRSLDVMLDRAEEIRERMKDGYISVEHMLLAFVDDERVGRKVLKGFNVDSAKIEASIKAVRGSQKVTDQNPESRY EALQKFGRDLTEQAKSGKLDPVIGRDDEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEALAQRIVNGDVPESLKNRQLI SLDIGSLIAGAKYRGEFEDRLKAVLREVTESNGNIVLFIDELHTVVGTGSNQQGAMDAGNLLKPMLARGELRCIGATTLD EFRKFIEKDAALERRFQQVYVDQPSVENTISILRGLKERYEVHHNVKISDSALVAAATLSARYIADRFLPDKAIDLVDEA AAQLKMEITSKPADLEAIDRRLMQLEMEKLSLAGEEKVAAPTKERLQRIELEITNLTEKQQDLNNQWQGEKQVLEAISLL KKEEDALRVQIEQAERAYDLNKAAQLKYGKLEGVQRDREAKEAKLLELQSQGSTLLREQVTEADIAEIVAKWTGIPVNRL LESERQKLLQLESHLHQRVIGQQEAVEAVSAAIRRARAGMKDPNRPIGSFLFMGPTGVGKTELARALAQFLFDADDALVR LDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLSEAVRRHPYSVVLLDEVEKAHPDVFNILLQVLDDGRITDSQGRTVDFRN TVIVMTSNIGSEHILDVSGDDTQYETMRNRVMDALRSHFRPEFLNRVDDTILFHALSRSEMSHIIRIQLKRVESLLRDQK ISFEISPAACDFLVEKGYDPVYGARPLKRAIQREIENPLATKILENTFISGDTIYIDQDENGLSFTNKAPVKVSVTQITT
Sequences:
>Translated_880_residues MQPTDPNKFTDKAWEVIVKSQDIVRAYQQQQLDVEHLILALIEDPTSLAVRILGRAEIDPIRLQQQLEAFTQRQTKVGKS DQLYLGRSLDVMLDRAEEIRERMKDGYISVEHMLLAFVDDERVGRKVLKGFNVDSAKIEASIKAVRGSQKVTDQNPESRY EALQKFGRDLTEQAKSGKLDPVIGRDDEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEALAQRIVNGDVPESLKNRQLI SLDIGSLIAGAKYRGEFEDRLKAVLREVTESNGNIVLFIDELHTVVGTGSNQQGAMDAGNLLKPMLARGELRCIGATTLD EFRKFIEKDAALERRFQQVYVDQPSVENTISILRGLKERYEVHHNVKISDSALVAAATLSARYIADRFLPDKAIDLVDEA AAQLKMEITSKPADLEAIDRRLMQLEMEKLSLAGEEKVAAPTKERLQRIELEITNLTEKQQDLNNQWQGEKQVLEAISLL KKEEDALRVQIEQAERAYDLNKAAQLKYGKLEGVQRDREAKEAKLLELQSQGSTLLREQVTEADIAEIVAKWTGIPVNRL LESERQKLLQLESHLHQRVIGQQEAVEAVSAAIRRARAGMKDPNRPIGSFLFMGPTGVGKTELARALAQFLFDADDALVR LDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLSEAVRRHPYSVVLLDEVEKAHPDVFNILLQVLDDGRITDSQGRTVDFRN TVIVMTSNIGSEHILDVSGDDTQYETMRNRVMDALRSHFRPEFLNRVDDTILFHALSRSEMSHIIRIQLKRVESLLRDQK ISFEISPAACDFLVEKGYDPVYGARPLKRAIQREIENPLATKILENTFISGDTIYIDQDENGLSFTNKAPVKVSVTQITT >Mature_880_residues MQPTDPNKFTDKAWEVIVKSQDIVRAYQQQQLDVEHLILALIEDPTSLAVRILGRAEIDPIRLQQQLEAFTQRQTKVGKS DQLYLGRSLDVMLDRAEEIRERMKDGYISVEHMLLAFVDDERVGRKVLKGFNVDSAKIEASIKAVRGSQKVTDQNPESRY EALQKFGRDLTEQAKSGKLDPVIGRDDEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEALAQRIVNGDVPESLKNRQLI SLDIGSLIAGAKYRGEFEDRLKAVLREVTESNGNIVLFIDELHTVVGTGSNQQGAMDAGNLLKPMLARGELRCIGATTLD EFRKFIEKDAALERRFQQVYVDQPSVENTISILRGLKERYEVHHNVKISDSALVAAATLSARYIADRFLPDKAIDLVDEA AAQLKMEITSKPADLEAIDRRLMQLEMEKLSLAGEEKVAAPTKERLQRIELEITNLTEKQQDLNNQWQGEKQVLEAISLL KKEEDALRVQIEQAERAYDLNKAAQLKYGKLEGVQRDREAKEAKLLELQSQGSTLLREQVTEADIAEIVAKWTGIPVNRL LESERQKLLQLESHLHQRVIGQQEAVEAVSAAIRRARAGMKDPNRPIGSFLFMGPTGVGKTELARALAQFLFDADDALVR LDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLSEAVRRHPYSVVLLDEVEKAHPDVFNILLQVLDDGRITDSQGRTVDFRN TVIVMTSNIGSEHILDVSGDDTQYETMRNRVMDALRSHFRPEFLNRVDDTILFHALSRSEMSHIIRIQLKRVESLLRDQK ISFEISPAACDFLVEKGYDPVYGARPLKRAIQREIENPLATKILENTFISGDTIYIDQDENGLSFTNKAPVKVSVTQITT
Specific function: Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase
COG id: COG0542
COG function: function code O; ATPases with chaperone activity, ATP-binding subunit
Gene ontology:
Cell location: Cytoplasm (Probable)
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the clpA/clpB family
Homologues:
Organism=Homo sapiens, GI13540606, Length=323, Percent_Identity=37.4613003095975, Blast_Score=216, Evalue=9e-56, Organism=Escherichia coli, GI1788943, Length=856, Percent_Identity=53.9719626168224, Blast_Score=924, Evalue=0.0, Organism=Escherichia coli, GI1787109, Length=430, Percent_Identity=40.4651162790698, Blast_Score=301, Evalue=2e-82, Organism=Saccharomyces cerevisiae, GI6320464, Length=710, Percent_Identity=51.5492957746479, Blast_Score=730, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6323002, Length=867, Percent_Identity=42.4452133794694, Blast_Score=673, Evalue=0.0,
Paralogues:
None
Copy number: 560 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): CLPB1_NOSS1 (Q8YUL9)
Other databases:
- EMBL: BA000019 - PIR: AC2096 - RefSeq: NP_486362.1 - ProteinModelPortal: Q8YUL9 - SMR: Q8YUL9 - STRING: Q8YUL9 - GeneID: 1105919 - GenomeReviews: BA000019_GR - KEGG: ana:alr2322 - NMPDR: fig|103690.1.peg.2629 - eggNOG: COG0542 - HOGENOM: HBG413133 - OMA: DDLIIFH - PhylomeDB: Q8YUL9 - ProtClustDB: CLSK2302172 - BioCyc: NSP103690:ALR2322-MONOMER - GO: GO:0005737 - InterPro: IPR003593 - InterPro: IPR013093 - InterPro: IPR003959 - InterPro: IPR018368 - InterPro: IPR017730 - InterPro: IPR001270 - InterPro: IPR019489 - InterPro: IPR004176 - InterPro: IPR023150 - Gene3D: G3DSA:1.10.1780.10 - PRINTS: PR00300 - SMART: SM00382 - TIGRFAMs: TIGR03346
Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF02861 Clp_N; PF10431 ClpB_D2-small
EC number: NA
Molecular weight: Translated: 99048; Mature: 99048
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: PS00870 CLPAB_1; PS00871 CLPAB_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQPTDPNKFTDKAWEVIVKSQDIVRAYQQQQLDVEHLILALIEDPTSLAVRILGRAEIDP CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCH IRLQQQLEAFTQRQTKVGKSDQLYLGRSLDVMLDRAEEIRERMKDGYISVEHMLLAFVDD HHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCC ERVGRKVLKGFNVDSAKIEASIKAVRGSQKVTDQNPESRYEALQKFGRDLTEQAKSGKLD HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC PVIGRDDEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEALAQRIVNGDVPESLKNRQLI CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEE SLDIGSLIAGAKYRGEFEDRLKAVLREVTESNGNIVLFIDELHTVVGTGSNQQGAMDAGN EEEHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCCHHH LLKPMLARGELRCIGATTLDEFRKFIEKDAALERRFQQVYVDQPSVENTISILRGLKERY HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH EVHHNVKISDSALVAAATLSARYIADRFLPDKAIDLVDEAAAQLKMEITSKPADLEAIDR HHHCCCEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH RLMQLEMEKLSLAGEEKVAAPTKERLQRIELEITNLTEKQQDLNNQWQGEKQVLEAISLL HHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH KKEEDALRVQIEQAERAYDLNKAAQLKYGKLEGVQRDREAKEAKLLELQSQGSTLLREQV HCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHH TEADIAEIVAKWTGIPVNRLLESERQKLLQLESHLHQRVIGQQEAVEAVSAAIRRARAGM HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC KDPNRPIGSFLFMGPTGVGKTELARALAQFLFDADDALVRLDMSEYMEKHSVSRLVGAPP CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHHEEECHHHHHHHHHHHHHHCCCC GYVGYEEGGQLSEAVRRHPYSVVLLDEVEKAHPDVFNILLQVLDDGRITDSQGRTVDFRN CCCCCCCCCHHHHHHHHCCCEEEEECHHHHHCCHHHHHHHHHHCCCCEECCCCCEEEECC TVIVMTSNIGSEHILDVSGDDTQYETMRNRVMDALRSHFRPEFLNRVDDTILFHALSRSE EEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH MSHIIRIQLKRVESLLRDQKISFEISPAACDFLVEKGYDPVYGARPLKRAIQREIENPLA HHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHH TKILENTFISGDTIYIDQDENGLSFTNKAPVKVSVTQITT HHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECC >Mature Secondary Structure MQPTDPNKFTDKAWEVIVKSQDIVRAYQQQQLDVEHLILALIEDPTSLAVRILGRAEIDP CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHCCCCCCH IRLQQQLEAFTQRQTKVGKSDQLYLGRSLDVMLDRAEEIRERMKDGYISVEHMLLAFVDD HHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHCC ERVGRKVLKGFNVDSAKIEASIKAVRGSQKVTDQNPESRYEALQKFGRDLTEQAKSGKLD HHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC PVIGRDDEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEALAQRIVNGDVPESLKNRQLI CCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEE SLDIGSLIAGAKYRGEFEDRLKAVLREVTESNGNIVLFIDELHTVVGTGSNQQGAMDAGN EEEHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCCCCCCCCCHHH LLKPMLARGELRCIGATTLDEFRKFIEKDAALERRFQQVYVDQPSVENTISILRGLKERY HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH EVHHNVKISDSALVAAATLSARYIADRFLPDKAIDLVDEAAAQLKMEITSKPADLEAIDR HHHCCCEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH RLMQLEMEKLSLAGEEKVAAPTKERLQRIELEITNLTEKQQDLNNQWQGEKQVLEAISLL HHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH KKEEDALRVQIEQAERAYDLNKAAQLKYGKLEGVQRDREAKEAKLLELQSQGSTLLREQV HCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHH TEADIAEIVAKWTGIPVNRLLESERQKLLQLESHLHQRVIGQQEAVEAVSAAIRRARAGM HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC KDPNRPIGSFLFMGPTGVGKTELARALAQFLFDADDALVRLDMSEYMEKHSVSRLVGAPP CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCHHHEEECHHHHHHHHHHHHHHCCCC GYVGYEEGGQLSEAVRRHPYSVVLLDEVEKAHPDVFNILLQVLDDGRITDSQGRTVDFRN CCCCCCCCCHHHHHHHHCCCEEEEECHHHHHCCHHHHHHHHHHCCCCEECCCCCEEEECC TVIVMTSNIGSEHILDVSGDDTQYETMRNRVMDALRSHFRPEFLNRVDDTILFHALSRSE EEEEEEECCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH MSHIIRIQLKRVESLLRDQKISFEISPAACDFLVEKGYDPVYGARPLKRAIQREIENPLA HHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHH TKILENTFISGDTIYIDQDENGLSFTNKAPVKVSVTQITT HHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11759840