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The map label for this gene is rbpF

Identifier: 17229803

GI number: 17229803

Start: 2785331

End: 2785648

Strand: Direct

Name: rbpF

Synonym: alr2311

Alternate gene names: 17229803

Gene position: 2785331-2785648 (Clockwise)

Preceding gene: 17229802

Following gene: 17229804

Centisome position: 43.43

GC content: 50.31

Gene sequence:

>318_bases
ATGTCAATTTATGTAGGGAACCTCTCTTACGAAGTTACGCAAGAGGATATCAGCAACGTTTTTGCAGAATATGGTTCTGT
AAAACGGGTTGTGCTACCTACTGACCGTGAAACAGGTCGCCTGCGCGGTTTTGCTTTTGTGGAAATGGGTTCAGATGCAG
AAGAAACAGCTGCCATCGAGGGTCTTGATGGTGCTGAGTGGATGGGTCGTGACCTGAAAGTCAATAAAGCCAAGCCCAAA
GAAGACAGAGGCTCCTTTGGTGGCGGAAACCGGGGAGGATACGGCGGTGGCGGTGGCGGTGGTCGTTCCCGTTATTAA

Upstream 100 bases:

>100_bases
AGTCTTTGTTTTTAGTATTAACAGGCTTTTCCTTTTGGTATTTACAGACCTCTCTCCGAAATTTAAATCTCTACACAGCC
ATGATTTTGGAGAGAAAAGA

Downstream 100 bases:

>100_bases
GAATTAATAATTAGGAATTTATCTAAATTCTTGAGGTCAGACAAATCGTCTGCCTTTTTTTTTCTTCATTGAGTCCTGAT
GGCATCTTTTTAGTAGTTAC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MSIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIEGLDGAEWMGRDLKVNKAKPK
EDRGSFGGGNRGGYGGGGGGGRSRY

Sequences:

>Translated_105_residues
MSIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIEGLDGAEWMGRDLKVNKAKPK
EDRGSFGGGNRGGYGGGGGGGRSRY
>Mature_104_residues
SIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIEGLDGAEWMGRDLKVNKAKPKE
DRGSFGGGNRGGYGGGGGGGRSRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain

Homologues:

Organism=Homo sapiens, GI4557493, Length=91, Percent_Identity=39.5604395604396, Blast_Score=67, Evalue=4e-12,
Organism=Homo sapiens, GI4826972, Length=73, Percent_Identity=42.4657534246575, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI14149675, Length=89, Percent_Identity=40.4494382022472, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17508567, Length=78, Percent_Identity=50, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17508585, Length=78, Percent_Identity=43.5897435897436, Blast_Score=76, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17508587, Length=82, Percent_Identity=41.4634146341463, Blast_Score=75, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17553656, Length=86, Percent_Identity=36.046511627907, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI17647301, Length=84, Percent_Identity=41.6666666666667, Blast_Score=72, Evalue=9e-14,
Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=37.8048780487805, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBPF_NOSS1 (Q9WX39)

Other databases:

- EMBL:   BA000019
- PIR:   AH2094
- RefSeq:   NP_486351.1
- HSSP:   Q9Y5S9
- ProteinModelPortal:   Q9WX39
- SMR:   Q9WX39
- GeneID:   1105908
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr2311
- NMPDR:   fig|103690.1.peg.2618
- eggNOG:   COG0724
- HOGENOM:   HBG756718
- OMA:   EDISNVF
- PhylomeDB:   Q9WX39
- ProtClustDB:   CLSK401747
- BioCyc:   NSP103690:ALR2311-MONOMER
- InterPro:   IPR012677
- InterPro:   IPR000504
- Gene3D:   G3DSA:3.30.70.330
- SMART:   SM00360

Pfam domain/function: PF00076 RRM_1

EC number: NA

Molecular weight: Translated: 11218; Mature: 11086

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIE
CEEEECCCEEEECHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEECCCCCHHHEEC
GLDGAEWMGRDLKVNKAKPKEDRGSFGGGNRGGYGGGGGGGRSRY
CCCCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIE
EEEECCCEEEECHHHHHHHHHHHCCEEEEEECCCCCCCCCCEEEEEEECCCCCHHHEEC
GLDGAEWMGRDLKVNKAKPKEDRGSFGGGNRGGYGGGGGGGRSRY
CCCCHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840