Click here to switch to the map view.

The map label for this gene is gvpC

Identifier: 17229744

GI number: 17229744

Start: 2705536

End: 2705925

Strand: Reverse

Name: gvpC

Synonym: all2252

Alternate gene names: 17229744

Gene position: 2705925-2705536 (Counterclockwise)

Preceding gene: 17229745

Following gene: 17229743

Centisome position: 42.19

GC content: 41.79

Gene sequence:

>390_bases
ATGACGGCTTTAATGGTAAGAATCCGGCAAGAGCATCGGTCGATAGCTGAGGAAGTAACTCAACTATTTAGAGAGACTCA
TGAATTCTTGTCCGCTACAACAGCACACAGACAAGAGCAAGCCAAACAGCAAGCGCAACAGCTACATCAGTTCCACCAAA
ATCTGGAGCAGACAACCCACGAGTTTTTAACAGAAACCACAACACAAAGGGTTGCTCAAGCTGAAGCACAGGCAAATTTT
TTGCATAAGTTTCACCAAAATCTAGAACAGACCACCCAAGAGTTTCTAGCAGAAACAGCAAAAAACAGAACTGAGCAAGC
CAAAGCACAAAGTCAATATCTGCAACAATTTCGTAAGGATTTGTTTGCTAGTATTTTTGGCACATTTTAG

Upstream 100 bases:

>100_bases
AAAGCGTAAGTATAAGTATTGTTTTAGCTACATTTATTGGATAGCCGTTATCCAGTAAATGTAGTTAATTGACGATTGTC
ATAATATTGCGGAGAACCTC

Downstream 100 bases:

>100_bases
TCATCAGTCAAAACTCTAACTAAAGGAGTTAACACCCTTTCTCTAAAATTTAAGTCTACAGATCGGTTTCTCCTGCTCCG
TGCTACCCATTTGTAGATCT

Product: gas vesicle protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MTALMVRIRQEHRSIAEEVTQLFRETHEFLSATTAHRQEQAKQQAQQLHQFHQNLEQTTHEFLTETTTQRVAQAEAQANF
LHKFHQNLEQTTQEFLAETAKNRTEQAKAQSQYLQQFRKDLFASIFGTF

Sequences:

>Translated_129_residues
MTALMVRIRQEHRSIAEEVTQLFRETHEFLSATTAHRQEQAKQQAQQLHQFHQNLEQTTHEFLTETTTQRVAQAEAQANF
LHKFHQNLEQTTQEFLAETAKNRTEQAKAQSQYLQQFRKDLFASIFGTF
>Mature_128_residues
TALMVRIRQEHRSIAEEVTQLFRETHEFLSATTAHRQEQAKQQAQQLHQFHQNLEQTTHEFLTETTTQRVAQAEAQANFL
HKFHQNLEQTTQEFLAETAKNRTEQAKAQSQYLQQFRKDLFASIFGTF

Specific function: May confer stability to the gas vesicle membranes. Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth

COG id: NA

COG function: NA

Gene ontology:

Cell location: Vacuole, gas vesicle membrane; Peripheral membrane protein; Cytoplasmic side. Note=Binds to the external surface of the gas vesicle membrane

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gas vesicle protein type C family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GVPC_NOSS1 (Q8YUS9)

Other databases:

- EMBL:   BA000019
- PIR:   AE2087
- RefSeq:   NP_486292.1
- GeneID:   1105849
- GenomeReviews:   BA000019_GR
- KEGG:   ana:all2252
- NMPDR:   fig|103690.1.peg.2559
- eggNOG:   NOG87536
- HOGENOM:   HBG139645
- OMA:   HEFLTET
- ProtClustDB:   CLSK895699
- BioCyc:   NSP103690:ALL2252-MONOMER
- GO:   GO:0016020
- GO:   GO:0005773
- InterPro:   IPR002003
- InterPro:   IPR018185
- TIGRFAMs:   TIGR02641

Pfam domain/function: PF01304 Gas_vesicle_C

EC number: NA

Molecular weight: Translated: 15219; Mature: 15088

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00235 GAS_VESICLE_C

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALMVRIRQEHRSIAEEVTQLFRETHEFLSATTAHRQEQAKQQAQQLHQFHQNLEQTTH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFLTETTTQRVAQAEAQANFLHKFHQNLEQTTQEFLAETAKNRTEQAKAQSQYLQQFRKD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFASIFGTF
HHHHHHHCC
>Mature Secondary Structure 
TALMVRIRQEHRSIAEEVTQLFRETHEFLSATTAHRQEQAKQQAQQLHQFHQNLEQTTH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFLTETTTQRVAQAEAQANFLHKFHQNLEQTTQEFLAETAKNRTEQAKAQSQYLQQFRKD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFASIFGTF
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840