Click here to switch to the map view.

The map label for this gene is 17229353

Identifier: 17229353

GI number: 17229353

Start: 2223388

End: 2224197

Strand: Reverse

Name: 17229353

Synonym: all1861

Alternate gene names: NA

Gene position: 2224197-2223388 (Counterclockwise)

Preceding gene: 17229354

Following gene: 17229341

Centisome position: 34.68

GC content: 49.26

Gene sequence:

>810_bases
ATGGAATTTATTGCTTATTCTTCTATGGTCATTGCTAACCAAGAGGCAAATGGTCAAACTGAATATCTGGAATATGAACT
ACCAAAGTTTGATTTTAGCTGGGGTAAATTGCTCAAGTCTTCCGCTTGGCTATCTGTAGCCGGCTTAATGGTATTGTTTA
CAGCCCTGACTCAAGTTAATGGTGCTTTGGCCGCATACGTGCGTACTAACGGCAGTTGTCTAAATGTGCGTACCTCCCCT
AGCATCAATGCCAAAGTCGTAGACTGTATCCCTAATGGAACTCAAATCAATTCCACAGGCAACGTTAATGGTTTTGCTCG
CCTATCTGGTAACAGATACGTAGCGGCTAAATGGGTGAGTGGAATGTCTGGTGGTCGTCCTGGCAACCCCGGCCCTGGTG
TTGGGGGGACTGTCACACTGCGCCTTGGTTCTCGTGGACAAGCAGTTTCCGCAGTGCAGAGAGCGATCGGAGTTGAACCC
ACAGGGTATTATGGTGCAGTAACAGCTCGACGTGTGCGCGAGTTTCAAGCCAATAATGGCTTACGTGCAGATGGTATCGT
CGGCCCACAAACCCGCAACGCGCTGTTTAGAGGGAACCAAAACCAACCACCAACTGGTGGCCCTGTAACACTGGGTTTCG
GTTCTCGCGGTTCAGCCGTTTCCGAAGTGCAGAGAGCGCTTGGTGTGGAACCCACAGGATATTATGGTACGGTGACAGTC
CGTCGAGTGCGTGAGTTTCAAGCCAATAATGGTTTACGTGTAGATGGTGTAGTTGGGCCAGAAACTCGCAGCGCCTTATT
TAGAAGTTAA

Upstream 100 bases:

>100_bases
CTGATACATAAAGGGAAAACACTCTATGATCAGTAGTATAAAGTACACAAATCTGGTATTTATTGTCATCTTTTAGCTGT
TAGACATAAGGTGTTCACTA

Downstream 100 bases:

>100_bases
TAACTTTAGCGAAAATCTTCACCCTTACCCCATAGCTTATAACTATGGGGTAACTTATTTATTGGTTAAGTAAGTCACAG
GGTGTAATCAGAGTTAGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: Endopeptidase Cell Wall Lytic Activity; NLP/P60 Protein; SpoIID/LytB Domain-Containing Protein; Stage II Sporulation D Domain-Containing Protein; ErfK/YbiS/YcfS/YnhG Family Protein; N-Acetylmuramoyl-L-Alanine Amidase; Endopeptidase LytF; Bacterial SH3 Domain Family

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MEFIAYSSMVIANQEANGQTEYLEYELPKFDFSWGKLLKSSAWLSVAGLMVLFTALTQVNGALAAYVRTNGSCLNVRTSP
SINAKVVDCIPNGTQINSTGNVNGFARLSGNRYVAAKWVSGMSGGRPGNPGPGVGGTVTLRLGSRGQAVSAVQRAIGVEP
TGYYGAVTARRVREFQANNGLRADGIVGPQTRNALFRGNQNQPPTGGPVTLGFGSRGSAVSEVQRALGVEPTGYYGTVTV
RRVREFQANNGLRVDGVVGPETRSALFRS

Sequences:

>Translated_269_residues
MEFIAYSSMVIANQEANGQTEYLEYELPKFDFSWGKLLKSSAWLSVAGLMVLFTALTQVNGALAAYVRTNGSCLNVRTSP
SINAKVVDCIPNGTQINSTGNVNGFARLSGNRYVAAKWVSGMSGGRPGNPGPGVGGTVTLRLGSRGQAVSAVQRAIGVEP
TGYYGAVTARRVREFQANNGLRADGIVGPQTRNALFRGNQNQPPTGGPVTLGFGSRGSAVSEVQRALGVEPTGYYGTVTV
RRVREFQANNGLRVDGVVGPETRSALFRS
>Mature_269_residues
MEFIAYSSMVIANQEANGQTEYLEYELPKFDFSWGKLLKSSAWLSVAGLMVLFTALTQVNGALAAYVRTNGSCLNVRTSP
SINAKVVDCIPNGTQINSTGNVNGFARLSGNRYVAAKWVSGMSGGRPGNPGPGVGGTVTLRLGSRGQAVSAVQRAIGVEP
TGYYGAVTARRVREFQANNGLRADGIVGPQTRNALFRGNQNQPPTGGPVTLGFGSRGSAVSEVQRALGVEPTGYYGTVTV
RRVREFQANNGLRVDGVVGPETRSALFRS

Specific function: Unknown

COG id: COG3409

COG function: function code M; Putative peptidoglycan-binding domain-containing protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28440; Mature: 28440

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFIAYSSMVIANQEANGQTEYLEYELPKFDFSWGKLLKSSAWLSVAGLMVLFTALTQVN
CCEEEEEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GALAAYVRTNGSCLNVRTSPSINAKVVDCIPNGTQINSTGNVNGFARLSGNRYVAAKWVS
CEEEEEEECCCCEEEEECCCCCCEEEEEECCCCCEECCCCCCCEEEEECCCEEEEEEECC
GMSGGRPGNPGPGVGGTVTLRLGSRGQAVSAVQRAIGVEPTGYYGAVTARRVREFQANNG
CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
LRADGIVGPQTRNALFRGNQNQPPTGGPVTLGFGSRGSAVSEVQRALGVEPTGYYGTVTV
CCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEH
RRVREFQANNGLRVDGVVGPETRSALFRS
HHHHHHHCCCCEEEECEECCCHHHHHHCC
>Mature Secondary Structure
MEFIAYSSMVIANQEANGQTEYLEYELPKFDFSWGKLLKSSAWLSVAGLMVLFTALTQVN
CCEEEEEEEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GALAAYVRTNGSCLNVRTSPSINAKVVDCIPNGTQINSTGNVNGFARLSGNRYVAAKWVS
CEEEEEEECCCCEEEEECCCCCCEEEEEECCCCCEECCCCCCCEEEEECCCEEEEEEECC
GMSGGRPGNPGPGVGGTVTLRLGSRGQAVSAVQRAIGVEPTGYYGAVTARRVREFQANNG
CCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
LRADGIVGPQTRNALFRGNQNQPPTGGPVTLGFGSRGSAVSEVQRALGVEPTGYYGTVTV
CCCCCCCCCCCCCHHCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEH
RRVREFQANNGLRVDGVVGPETRSALFRS
HHHHHHHCCCCEEEECEECCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA