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The map label for this gene is pds [H]

Identifier: 17229324

GI number: 17229324

Start: 2196519

End: 2197958

Strand: Direct

Name: pds [H]

Synonym: alr1832

Alternate gene names: 17229324

Gene position: 2196519-2197958 (Clockwise)

Preceding gene: 17229320

Following gene: 17229325

Centisome position: 34.25

GC content: 48.12

Gene sequence:

>1440_bases
ATGCGAGTAGCGATCGCTGGCGCTGGTCTAGCAGGACTTTCCTGCGCGAAATATCTCACGGACGCAGGTCACACTCCCAT
AGTCTTAGAGCGTCGGGACGTATTGGGTGGCCTTGTGGCGGCGTGGAAAGACTCTGACGGCGACTGGTACGAAACCGGGT
TACACGCCTTCTTTGGGGCATATCCCAATATGCTGCAATTACTCAAGGAGTTGGGTATTGAAGACCGACTCCAGTGGAAA
GAACATACACTGATTTTTAATCAACCAGATAAACCTGGAACACTCTCACGTTTTGATGTTCCGGATATCCCCTCTCCCTT
TAACATCATTGCCTCGATCCTTCGCAACAACGATATGTTGACCTGGGAGCAGAAGATTAGGTTCGCCATTGGACTGCTTC
CAGCCATAGTTCGAGGACAGAAGTATGTCGAGGAGATGGACAAGTACAGCTTCTCAGATTGGTTGAAAAGGCAAGGTGTG
GGTGAGCGGGTAGCAAGTGACGTGTTCATTGCTGCATCTAAGGCCTTAACCTTTATTAATCCTGATGAAGTTTCCTCCAC
AATTTTATTAACAGCCCTAAATCGCTTTCTGCAAGAGCGATATGGCTCCAAAATAGCCTTTTTGGATGGTTCTCCCACAG
AACGGCTGTGTCAACCCATCGTTGATTACATCACCGAACGGGGTGGAGAAGTCAGGCTCAACGCCCCTCTAAAAGAGATT
TTGCTCAATCCGGATGGTACAGTAAAAGGGTTCTTGCTGCGCGGGTTAAATGGAGAGCCAGATGAAGTGATTACGGCAGA
CTTTTACGTGTCAGCTATGGCAGTTGACCCCTTGAAAGTCATGTTGCCACAGCCTTGGCAGCAAATGGAGTTTTTCCAGA
AGCTAGAAGGTTTAGAAGGCGTGCCAGTAATTAACCTCCATCTGTGGTTTGATCGGAAATTAACAGACATTGATCACCTG
TTGTTTTCGCGATCGCCCCTCCTCAGCGTTTATGCTGATATGAGCAACACTTGTCGTGAATATGCTAATCCCGACCGCTC
AATGCTGGAATTAGTTCTAGCTCCTGCCAAAGATTGGATTAGTAAATCCGACGAGGAAATTGTCTCTGCTACTATGGTCG
AGTTGGAAAAACTCTTCCCCGACCACTTTAAAGGAGATAATCCAGCAAAATTGCTGAAATCTCACGTCGTAAAAACGCCG
CGTTCAGTTTACAAAGCGACTCCTGGTCGTCAACAGTACCGTCCAGCCCAAAAAACCCCCATTGCCAATTTCTTTTTAAG
TGGGAGTTACACCATGCAGCGCTATTTAGGCAGTATGGAAGGGGCCGTACTTTCTGGTAAGCTAACAGCGCAGGCGATTT
GTGAATCGCTGCCAGAGGACAACACCTCAAACCTGCAAACGCTAACCCGACCGCCTGCAACGAATGCTGCAACTGCCTGA

Upstream 100 bases:

>100_bases
TTCTAGAAGCGATCGCACAATTACTGCCAAATGTAACGGATTGCAAAGTATAATGAGAACGGCAAAACCATTAAGAAATA
TTGAAGAACAGTAGGTTTAA

Downstream 100 bases:

>100_bases
TTCCCCCCCGCGCATGAAAACGCTGGTCTCTGTAGACGAGTCATATAAACTTTGTCGGCATCTCACAGCCAAGTATGCCA
AAACTTTTTACTTGGGTACA

Product: phytoene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 479; Mature: 479

Protein sequence:

>479_residues
MRVAIAGAGLAGLSCAKYLTDAGHTPIVLERRDVLGGLVAAWKDSDGDWYETGLHAFFGAYPNMLQLLKELGIEDRLQWK
EHTLIFNQPDKPGTLSRFDVPDIPSPFNIIASILRNNDMLTWEQKIRFAIGLLPAIVRGQKYVEEMDKYSFSDWLKRQGV
GERVASDVFIAASKALTFINPDEVSSTILLTALNRFLQERYGSKIAFLDGSPTERLCQPIVDYITERGGEVRLNAPLKEI
LLNPDGTVKGFLLRGLNGEPDEVITADFYVSAMAVDPLKVMLPQPWQQMEFFQKLEGLEGVPVINLHLWFDRKLTDIDHL
LFSRSPLLSVYADMSNTCREYANPDRSMLELVLAPAKDWISKSDEEIVSATMVELEKLFPDHFKGDNPAKLLKSHVVKTP
RSVYKATPGRQQYRPAQKTPIANFFLSGSYTMQRYLGSMEGAVLSGKLTAQAICESLPEDNTSNLQTLTRPPATNAATA

Sequences:

>Translated_479_residues
MRVAIAGAGLAGLSCAKYLTDAGHTPIVLERRDVLGGLVAAWKDSDGDWYETGLHAFFGAYPNMLQLLKELGIEDRLQWK
EHTLIFNQPDKPGTLSRFDVPDIPSPFNIIASILRNNDMLTWEQKIRFAIGLLPAIVRGQKYVEEMDKYSFSDWLKRQGV
GERVASDVFIAASKALTFINPDEVSSTILLTALNRFLQERYGSKIAFLDGSPTERLCQPIVDYITERGGEVRLNAPLKEI
LLNPDGTVKGFLLRGLNGEPDEVITADFYVSAMAVDPLKVMLPQPWQQMEFFQKLEGLEGVPVINLHLWFDRKLTDIDHL
LFSRSPLLSVYADMSNTCREYANPDRSMLELVLAPAKDWISKSDEEIVSATMVELEKLFPDHFKGDNPAKLLKSHVVKTP
RSVYKATPGRQQYRPAQKTPIANFFLSGSYTMQRYLGSMEGAVLSGKLTAQAICESLPEDNTSNLQTLTRPPATNAATA
>Mature_479_residues
MRVAIAGAGLAGLSCAKYLTDAGHTPIVLERRDVLGGLVAAWKDSDGDWYETGLHAFFGAYPNMLQLLKELGIEDRLQWK
EHTLIFNQPDKPGTLSRFDVPDIPSPFNIIASILRNNDMLTWEQKIRFAIGLLPAIVRGQKYVEEMDKYSFSDWLKRQGV
GERVASDVFIAASKALTFINPDEVSSTILLTALNRFLQERYGSKIAFLDGSPTERLCQPIVDYITERGGEVRLNAPLKEI
LLNPDGTVKGFLLRGLNGEPDEVITADFYVSAMAVDPLKVMLPQPWQQMEFFQKLEGLEGVPVINLHLWFDRKLTDIDHL
LFSRSPLLSVYADMSNTCREYANPDRSMLELVLAPAKDWISKSDEEIVSATMVELEKLFPDHFKGDNPAKLLKSHVVKTP
RSVYKATPGRQQYRPAQKTPIANFFLSGSYTMQRYLGSMEGAVLSGKLTAQAICESLPEDNTSNLQTLTRPPATNAATA

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001613
- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: 1.3.99.-

Molecular weight: Translated: 53488; Mature: 53488

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVAIAGAGLAGLSCAKYLTDAGHTPIVLERRDVLGGLVAAWKDSDGDWYETGLHAFFGA
CEEEEECCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
YPNMLQLLKELGIEDRLQWKEHTLIFNQPDKPGTLSRFDVPDIPSPFNIIASILRNNDML
CHHHHHHHHHCCCCHHCCHHHCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
TWEQKIRFAIGLLPAIVRGQKYVEEMDKYSFSDWLKRQGVGERVASDVFIAASKALTFIN
EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCEEEEEC
PDEVSSTILLTALNRFLQERYGSKIAFLDGSPTERLCQPIVDYITERGGEVRLNAPLKEI
HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCHHHH
LLNPDGTVKGFLLRGLNGEPDEVITADFYVSAMAVDPLKVMLPQPWQQMEFFQKLEGLEG
HCCCCCCEEHHHEECCCCCCCCEEEHHHEEEHHHCCCHHHHCCCCHHHHHHHHHHCCCCC
VPVINLHLWFDRKLTDIDHLLFSRSPLLSVYADMSNTCREYANPDRSMLELVLAPAKDWI
CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHH
SKSDEEIVSATMVELEKLFPDHFKGDNPAKLLKSHVVKTPRSVYKATPGRQQYRPAQKTP
CCCHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHCCHHHHHCCCCHHHCCCCCCCC
IANFFLSGSYTMQRYLGSMEGAVLSGKLTAQAICESLPEDNTSNLQTLTRPPATNAATA
HHHEEECCCHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCC
>Mature Secondary Structure
MRVAIAGAGLAGLSCAKYLTDAGHTPIVLERRDVLGGLVAAWKDSDGDWYETGLHAFFGA
CEEEEECCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
YPNMLQLLKELGIEDRLQWKEHTLIFNQPDKPGTLSRFDVPDIPSPFNIIASILRNNDML
CHHHHHHHHHCCCCHHCCHHHCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
TWEQKIRFAIGLLPAIVRGQKYVEEMDKYSFSDWLKRQGVGERVASDVFIAASKALTFIN
EHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCEEEEEC
PDEVSSTILLTALNRFLQERYGSKIAFLDGSPTERLCQPIVDYITERGGEVRLNAPLKEI
HHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCHHHH
LLNPDGTVKGFLLRGLNGEPDEVITADFYVSAMAVDPLKVMLPQPWQQMEFFQKLEGLEG
HCCCCCCEEHHHEECCCCCCCCEEEHHHEEEHHHCCCHHHHCCCCHHHHHHHHHHCCCCC
VPVINLHLWFDRKLTDIDHLLFSRSPLLSVYADMSNTCREYANPDRSMLELVLAPAKDWI
CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHH
SKSDEEIVSATMVELEKLFPDHFKGDNPAKLLKSHVVKTPRSVYKATPGRQQYRPAQKTP
CCCHHHHHHHHHHHHHHHCHHHCCCCCHHHHHHHHHHHCCHHHHHCCCCHHHCCCCCCCC
IANFFLSGSYTMQRYLGSMEGAVLSGKLTAQAICESLPEDNTSNLQTLTRPPATNAATA
HHHEEECCCHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1581575; 8905231 [H]