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The map label for this gene is nusB [H]

Identifier: 17229252

GI number: 17229252

Start: 2115604

End: 2116239

Strand: Reverse

Name: nusB [H]

Synonym: all1760

Alternate gene names: 17229252

Gene position: 2116239-2115604 (Counterclockwise)

Preceding gene: 17229253

Following gene: 17229251

Centisome position: 33.0

GC content: 44.65

Gene sequence:

>636_bases
ATGCAAGACCGTAAACCCCAGCAAATCGCTCGTGAACTGGCACTTTTAAGCCTGAGCCAGTTACCATTAAACCCCAAAAA
ATTAACCGAAGAACACCTGCCCAAACTAGTATTGGCTACAGTACGTACCTTGAGAGCAGAAGTACAAGATACCTTGGATA
ATGCGGCCGCTGAATTGCAACGTAGTAACGATCGCCTGTTAACCAGTCAAACACGGGCTTCAGACTTAAATACTGCGCGT
AATATGCTGCAAGAAGCAATTTCCTACACACAAACAGCCATCAATCAGCTAGGTGCATCTGTTGAGTTTCCTGAATTAAT
TCAGCTAGCAAATCAAGACAAGGAAGTAGGCAGATATGCCATCAAACTTGTCAAAATCATCAATGAAGAACGCAGCGTGA
TTGATGAACAAATTACCTCTGCCCTAGTTGATTGGCAAGTTACTCGCCTGGCACAAATTGACCGCGATATTCTTCGCATT
GCCGTAGCAGAAATGATGTTCTTTAATCTGCCCAACAGCGTGGCCATTAACGAAGCCGTAGAGTTAGCTAAACGCTACAG
TGGCGATGAAGGACATCGTTTCATTAACGGTGTACTACGCCGAGTCTCAGACCAAAAAAAGGCGCTGAGTGTTTAG

Upstream 100 bases:

>100_bases
TAACTTCGTACCTAATACAGATAAGATGGTTGTCTGGCTTTGTCAAAATTGAATAATTTGTCACCCAGCAATTAAATTAC
TACTGAAATATTTAACTATT

Downstream 100 bases:

>100_bases
TACTGTAAAGATCTGTAGGTATGGCTGTGCTGAAACAAGTAGTGGAGTGTTGAGCAGAGTATTGAGTCAGATTTAATTCA
TCTCCTCTGCTCCCGTTCGG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MQDRKPQQIARELALLSLSQLPLNPKKLTEEHLPKLVLATVRTLRAEVQDTLDNAAAELQRSNDRLLTSQTRASDLNTAR
NMLQEAISYTQTAINQLGASVEFPELIQLANQDKEVGRYAIKLVKIINEERSVIDEQITSALVDWQVTRLAQIDRDILRI
AVAEMMFFNLPNSVAINEAVELAKRYSGDEGHRFINGVLRRVSDQKKALSV

Sequences:

>Translated_211_residues
MQDRKPQQIARELALLSLSQLPLNPKKLTEEHLPKLVLATVRTLRAEVQDTLDNAAAELQRSNDRLLTSQTRASDLNTAR
NMLQEAISYTQTAINQLGASVEFPELIQLANQDKEVGRYAIKLVKIINEERSVIDEQITSALVDWQVTRLAQIDRDILRI
AVAEMMFFNLPNSVAINEAVELAKRYSGDEGHRFINGVLRRVSDQKKALSV
>Mature_211_residues
MQDRKPQQIARELALLSLSQLPLNPKKLTEEHLPKLVLATVRTLRAEVQDTLDNAAAELQRSNDRLLTSQTRASDLNTAR
NMLQEAISYTQTAINQLGASVEFPELIQLANQDKEVGRYAIKLVKIINEERSVIDEQITSALVDWQVTRLAQIDRDILRI
AVAEMMFFNLPNSVAINEAVELAKRYSGDEGHRFINGVLRRVSDQKKALSV

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

None

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 23801; Mature: 23801

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDRKPQQIARELALLSLSQLPLNPKKLTEEHLPKLVLATVRTLRAEVQDTLDNAAAELQ
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSNDRLLTSQTRASDLNTARNMLQEAISYTQTAINQLGASVEFPELIQLANQDKEVGRYA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHH
IKLVKIINEERSVIDEQITSALVDWQVTRLAQIDRDILRIAVAEMMFFNLPNSVAINEAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ELAKRYSGDEGHRFINGVLRRVSDQKKALSV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQDRKPQQIARELALLSLSQLPLNPKKLTEEHLPKLVLATVRTLRAEVQDTLDNAAAELQ
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSNDRLLTSQTRASDLNTARNMLQEAISYTQTAINQLGASVEFPELIQLANQDKEVGRYA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHH
IKLVKIINEERSVIDEQITSALVDWQVTRLAQIDRDILRIAVAEMMFFNLPNSVAINEAV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
ELAKRYSGDEGHRFINGVLRRVSDQKKALSV
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA