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The map label for this gene is 17229242

Identifier: 17229242

GI number: 17229242

Start: 2103839

End: 2104900

Strand: Reverse

Name: 17229242

Synonym: all1750

Alternate gene names: NA

Gene position: 2104900-2103839 (Counterclockwise)

Preceding gene: 17229243

Following gene: 17229241

Centisome position: 32.82

GC content: 47.83

Gene sequence:

>1062_bases
ATGAACCTAACAAGCAGCAAAAATAAGGAATTTGAAGAACACTATTCAGGGATGCTGGCAGAATACGTAACAGCGATCGC
CTGGTCTCCACAAGGGAATACTCTAGCCGCAACTTCGGCGGCTGGGGAAGTAGTACTGTGGCAGGATGGTGAGTTAACAA
CGCTGCAAGCTGGTAATGGCCAGTCTGTCGATTGTCTCGCTTTCTCCCCTGATGGCAAATTTCTCGCCGTTGGTGGACAA
GATGGACGGGTGAAAATCTGGCAAGGACAGGAATTAATCGCCACCTTAGAAAATGCACCTGCATGGGTAGACAAGTTAGC
TTGGAGTCACGCTAGCAACCAGTTGGCTTTTAGTTTGGGGCGTTATGTACAAATTTGGGACGCTGATACTCGTGAGGTTG
TCACTACCCTGAATTTTGCCGACTCATCCGCATTGAGTATTGATTGGCGGATTGATGGTCAATACCTAGCAATTGGTGGT
AACAAAGGCATCAAAATTTGGCACGCCCAAGACTGGGATGAAGAACCATATATTCTCAATATGCCTACTGTGAGTGTGAC
TATGGCTTGGTCGCCTGATGGTAAATTCCTGGCTTCAGGCAACATGGATCGTAGCGTCACCGTGTTGGAATGGAATAATC
CCGACCCTTGGGTCATGCGTGGCTTTCCCGGTAAGATTCGCCAACTAGCATGGTCAGAAGCAACCACCAAACTAGGCGCA
CCAATACTAGCCTCTGCCAGTGTGGAAGGTATTGTGGCGTGGGAAAAGCTAGAAGATGAGAACTTGGGATGGGAAGCGCG
AGTGTTAACTAATCATGTAGGTGTGATTAATGCGATCGCCTTTGCACCTAAAAGCTTCTTACTAGCCTCGGCTGCAACTG
ATGGCTGGCTTTGTTTGTGGAACAAAGCCAAGGAAGTATCCCAAATTCTTACGGGTGTAGCCGATGGATTTTCCGCCCTA
GCATGGCATCCCCAAGGTAAGCTAATTGCCGCAGGTGGTGAAAAAGGAGAATTACTCATTTGGTCAAAGATTTTACGGGG
TCAAGGATTTGGACGTAATTAA

Upstream 100 bases:

>100_bases
AGGGCTAGGGGGCTAGAGGCGAAGGACTAGTTAAAAAGATATTTACTAACCCCTAACCTCCAACCTCTAATCTCTCACCT
CTCACTTCTCTAAACAACGT

Downstream 100 bases:

>100_bases
TTAGTATTTATTCACTAAAGTTGAAGATAGTTAATAAATTGGCTATGCTGTATCAGAAATAGTAATTATTTGTGAATTAT
GTACTTAGTCAAACTAGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MNLTSSKNKEFEEHYSGMLAEYVTAIAWSPQGNTLAATSAAGEVVLWQDGELTTLQAGNGQSVDCLAFSPDGKFLAVGGQ
DGRVKIWQGQELIATLENAPAWVDKLAWSHASNQLAFSLGRYVQIWDADTREVVTTLNFADSSALSIDWRIDGQYLAIGG
NKGIKIWHAQDWDEEPYILNMPTVSVTMAWSPDGKFLASGNMDRSVTVLEWNNPDPWVMRGFPGKIRQLAWSEATTKLGA
PILASASVEGIVAWEKLEDENLGWEARVLTNHVGVINAIAFAPKSFLLASAATDGWLCLWNKAKEVSQILTGVADGFSAL
AWHPQGKLIAAGGEKGELLIWSKILRGQGFGRN

Sequences:

>Translated_353_residues
MNLTSSKNKEFEEHYSGMLAEYVTAIAWSPQGNTLAATSAAGEVVLWQDGELTTLQAGNGQSVDCLAFSPDGKFLAVGGQ
DGRVKIWQGQELIATLENAPAWVDKLAWSHASNQLAFSLGRYVQIWDADTREVVTTLNFADSSALSIDWRIDGQYLAIGG
NKGIKIWHAQDWDEEPYILNMPTVSVTMAWSPDGKFLASGNMDRSVTVLEWNNPDPWVMRGFPGKIRQLAWSEATTKLGA
PILASASVEGIVAWEKLEDENLGWEARVLTNHVGVINAIAFAPKSFLLASAATDGWLCLWNKAKEVSQILTGVADGFSAL
AWHPQGKLIAAGGEKGELLIWSKILRGQGFGRN
>Mature_353_residues
MNLTSSKNKEFEEHYSGMLAEYVTAIAWSPQGNTLAATSAAGEVVLWQDGELTTLQAGNGQSVDCLAFSPDGKFLAVGGQ
DGRVKIWQGQELIATLENAPAWVDKLAWSHASNQLAFSLGRYVQIWDADTREVVTTLNFADSSALSIDWRIDGQYLAIGG
NKGIKIWHAQDWDEEPYILNMPTVSVTMAWSPDGKFLASGNMDRSVTVLEWNNPDPWVMRGFPGKIRQLAWSEATTKLGA
PILASASVEGIVAWEKLEDENLGWEARVLTNHVGVINAIAFAPKSFLLASAATDGWLCLWNKAKEVSQILTGVADGFSAL
AWHPQGKLIAAGGEKGELLIWSKILRGQGFGRN

Specific function: Unknown

COG id: COG2319

COG function: function code R; FOG: WD40 repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 15 WD repeats [H]

Homologues:

Organism=Homo sapiens, GI19913367, Length=345, Percent_Identity=24.3478260869565, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI19913365, Length=345, Percent_Identity=24.3478260869565, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI15150805, Length=345, Percent_Identity=24.3478260869565, Blast_Score=74, Evalue=3e-13,
Organism=Homo sapiens, GI19913371, Length=345, Percent_Identity=24.3478260869565, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI213021190, Length=345, Percent_Identity=23.768115942029, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI213021188, Length=345, Percent_Identity=23.768115942029, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI213021186, Length=345, Percent_Identity=23.768115942029, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI5032159, Length=345, Percent_Identity=23.768115942029, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI26665869, Length=202, Percent_Identity=26.7326732673267, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI4757988, Length=320, Percent_Identity=25, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI113865883, Length=283, Percent_Identity=25.7950530035336, Blast_Score=67, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6319926, Length=267, Percent_Identity=24.3445692883895, Blast_Score=69, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6319916, Length=115, Percent_Identity=29.5652173913043, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17137500, Length=362, Percent_Identity=23.4806629834254, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24663767, Length=309, Percent_Identity=24.9190938511327, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45549090, Length=343, Percent_Identity=25.0728862973761, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000767
- InterPro:   IPR020472
- InterPro:   IPR002182
- InterPro:   IPR015943
- InterPro:   IPR001680
- InterPro:   IPR011046
- InterPro:   IPR019782
- InterPro:   IPR019775
- InterPro:   IPR017986
- InterPro:   IPR019781 [H]

Pfam domain/function: PF00931 NB-ARC; PF00400 WD40 [H]

EC number: NA

Molecular weight: Translated: 38435; Mature: 38435

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS50082 WD_REPEATS_2 ; PS50294 WD_REPEATS_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTSSKNKEFEEHYSGMLAEYVTAIAWSPQGNTLAATSAAGEVVLWQDGELTTLQAGNG
CCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCEEEEEECCCEEEEECCCC
QSVDCLAFSPDGKFLAVGGQDGRVKIWQGQELIATLENAPAWVDKLAWSHASNQLAFSLG
CCEEEEEECCCCCEEEECCCCCEEEEEECCCEEEECCCCCHHHHHHHHHCCCCCEEEECC
RYVQIWDADTREVVTTLNFADSSALSIDWRIDGQYLAIGGNKGIKIWHAQDWDEEPYILN
CEEEEECCCCHHEEEEEECCCCCEEEEEEEECCEEEEEECCCCEEEEECCCCCCCCEEEE
MPTVSVTMAWSPDGKFLASGNMDRSVTVLEWNNPDPWVMRGFPGKIRQLAWSEATTKLGA
CCEEEEEEEECCCCCEEECCCCCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHCCC
PILASASVEGIVAWEKLEDENLGWEARVLTNHVGVINAIAFAPKSFLLASAATDGWLCLW
CEEECCCCCEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHCCCHHEEEECCCCCEEEEE
NKAKEVSQILTGVADGFSALAWHPQGKLIAAGGEKGELLIWSKILRGQGFGRN
CCHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCEEEEEHHHCCCCCCCC
>Mature Secondary Structure
MNLTSSKNKEFEEHYSGMLAEYVTAIAWSPQGNTLAATSAAGEVVLWQDGELTTLQAGNG
CCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCEEEEECCCCEEEEEECCCEEEEECCCC
QSVDCLAFSPDGKFLAVGGQDGRVKIWQGQELIATLENAPAWVDKLAWSHASNQLAFSLG
CCEEEEEECCCCCEEEECCCCCEEEEEECCCEEEECCCCCHHHHHHHHHCCCCCEEEECC
RYVQIWDADTREVVTTLNFADSSALSIDWRIDGQYLAIGGNKGIKIWHAQDWDEEPYILN
CEEEEECCCCHHEEEEEECCCCCEEEEEEEECCEEEEEECCCCEEEEECCCCCCCCEEEE
MPTVSVTMAWSPDGKFLASGNMDRSVTVLEWNNPDPWVMRGFPGKIRQLAWSEATTKLGA
CCEEEEEEEECCCCCEEECCCCCCEEEEEEECCCCCEEEECCCHHHHHHHHHHHHHHCCC
PILASASVEGIVAWEKLEDENLGWEARVLTNHVGVINAIAFAPKSFLLASAATDGWLCLW
CEEECCCCCEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHCCCHHEEEECCCCCEEEEE
NKAKEVSQILTGVADGFSALAWHPQGKLIAAGGEKGELLIWSKILRGQGFGRN
CCHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCEEEEEHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]