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The map label for this gene is pecF

Identifier: 17228023

GI number: 17228023

Start: 619696

End: 620217

Strand: Direct

Name: pecF

Synonym: alr0527

Alternate gene names: 17228023

Gene position: 619696-620217 (Clockwise)

Preceding gene: 17228022

Following gene: 17228024

Centisome position: 9.66

GC content: 42.91

Gene sequence:

>522_bases
ATGAATCAAGCTTCATTGAGCGTAGACGCTATTACCAATTTAATCGAAGCATTTCATCATCACCATCCTGCTGTTAGAAG
TGCGGCTGTAGATGAATTAATCAAATTGGGAAGCATCACAGTTAATTTGTTAATTGCTGCTTATGATGATTCTCAAGATC
AAGGTTTTCAAGCCCAGATCATTCAGGTTTTAGCTCAAATTGGTGATGCAAAGGCACTAAAATTATTAGCCGAGGTGGTG
GGGACAAGTGTAGCCAATCACTGTCAAGGTAATGTCCGCCGCATTGCTGCACGAGGGTTAGGAAAAATCGCCAGCACCAC
TAGTAATACAGAAATAATCAACAATGCTCAAGAAAAGTTAATTTGGGCATTACTTACCCCCGAAGATTGGGGTCTACGTT
ACGCTGCTGCTGTCTCTTTACAAGAAATTGCCACGCCAAAAGCTAAAGCTGCTTTACAACAAGCGATCGCCCAAGAAACC
GATCCAGTTGTTCGCTCACGTATGGCGATCGCCTTGAGTTAG

Upstream 100 bases:

>100_bases
ATTTTAACTATTGACTATAAATGTTTGAAACCCCTACACCCGGTCTCAACAGAAAATCTGGGTGCGTAATTCGTAGCATT
GTTTTATCCAGAAATAAATT

Downstream 100 bases:

>100_bases
GGAACAGAGAGCAAGGGGGAGAAACTTAAAGATTTCCCCAATCCCAATTCCTCATCTCTCATCCCTGGAAATGTTGCGAA
AGATTAATTTTACGTTTATT

Product: bilin biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MNQASLSVDAITNLIEAFHHHHPAVRSAAVDELIKLGSITVNLLIAAYDDSQDQGFQAQIIQVLAQIGDAKALKLLAEVV
GTSVANHCQGNVRRIAARGLGKIASTTSNTEIINNAQEKLIWALLTPEDWGLRYAAAVSLQEIATPKAKAALQQAIAQET
DPVVRSRMAIALS

Sequences:

>Translated_173_residues
MNQASLSVDAITNLIEAFHHHHPAVRSAAVDELIKLGSITVNLLIAAYDDSQDQGFQAQIIQVLAQIGDAKALKLLAEVV
GTSVANHCQGNVRRIAARGLGKIASTTSNTEIINNAQEKLIWALLTPEDWGLRYAAAVSLQEIATPKAKAALQQAIAQET
DPVVRSRMAIALS
>Mature_173_residues
MNQASLSVDAITNLIEAFHHHHPAVRSAAVDELIKLGSITVNLLIAAYDDSQDQGFQAQIIQVLAQIGDAKALKLLAEVV
GTSVANHCQGNVRRIAARGLGKIASTTSNTEIINNAQEKLIWALLTPEDWGLRYAAAVSLQEIATPKAKAALQQAIAQET
DPVVRSRMAIALS

Specific function: An enzyme involved in the biosynthesis of bilin

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PECF_NOSS1 (P35798)

Other databases:

- EMBL:   AF178757
- EMBL:   BA000019
- PIR:   AF1872
- PIR:   E41841
- RefSeq:   NP_484571.1
- ProteinModelPortal:   P35798
- STRING:   P35798
- GeneID:   1104123
- GenomeReviews:   BA000019_GR
- KEGG:   ana:alr0527
- NMPDR:   fig|103690.1.peg.838
- eggNOG:   COG1413
- HOGENOM:   HBG140001
- OMA:   TSVANHC
- ProtClustDB:   CLSK285774
- BioCyc:   NSP103690:ALR0527-MONOMER
- GO:   GO:0030089
- GO:   GO:0005488
- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155
- Gene3D:   G3DSA:1.25.10.10
- SMART:   SM00567

Pfam domain/function: PF03130 HEAT_PBS; SSF48371 ARM-type_fold

EC number: NA

Molecular weight: Translated: 18467; Mature: 18467

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQASLSVDAITNLIEAFHHHHPAVRSAAVDELIKLGSITVNLLIAAYDDSQDQGFQAQI
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHH
IQVLAQIGDAKALKLLAEVVGTSVANHCQGNVRRIAARGLGKIASTTSNTEIINNAQEKL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IWALLTPEDWGLRYAAAVSLQEIATPKAKAALQQAIAQETDPVVRSRMAIALS
EEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MNQASLSVDAITNLIEAFHHHHPAVRSAAVDELIKLGSITVNLLIAAYDDSQDQGFQAQI
CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHH
IQVLAQIGDAKALKLLAEVVGTSVANHCQGNVRRIAARGLGKIASTTSNTEIINNAQEKL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
IWALLTPEDWGLRYAAAVSLQEIATPKAKAALQQAIAQETDPVVRSRMAIALS
EEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1556083; 11759840