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The map label for this gene is yedQ [H]

Identifier: 172087797

GI number: 172087797

Start: 269561

End: 271267

Strand: Reverse

Name: yedQ [H]

Synonym: VF_A0244

Alternate gene names: 172087797

Gene position: 271267-269561 (Counterclockwise)

Preceding gene: 59713430

Following gene: 59713423

Centisome position: 20.39

GC content: 31.4

Gene sequence:

>1707_bases
ATGATTATGAATAAATACTTCATTTATCAGCCTAACTTCTTTGAAGGTTCTATTGTTTCTTACGAAGCATTAATTAGATT
TAAAGACTCAACGATTCTTCCAAATGAATTCATTGAATCACTTGAAGATAAAACGTCTTTTGATAAAGAGGTTGTTTCGC
ATGTCATATCAGACAAATTAACGTTAAAAAACAACGAAAACATTCATATTTCGATAAACGTATTCGCAAAAAGTCTGGAA
TCAAATGAGTTTGTTGAACATTGCGAACAAATATTTTCTCAACATCAAGGATTTACTCTAGAACTTAACTTCAAAAACCA
AGTCTATGAGTTAGAGAAAATAAAGCAAAATATGTCACGATTGAAGGCATTAGGCGTACTTTTTACTCTTGATGACTATG
GAACAGAATGCAAGCACTCTGATCCATTACTAGGACTCAATTTTGATTATATAAAAATTGATCGTGCTCTTATTAGTACA
ATTAGTGATGACTATTTGTCATTTTGTTTTTTACGCTCTTTATATCATAAATTACATAAATTTCTCGGTTATAAAGTAGC
GATAAAAGGCATTGAAAATATAAATCAGTTAAACTTAATTAATTCTTTTGGATCTGTCATATCACAAGGTTATCATTTAT
CGTATCCGTTAGAACTAAATGAACTTAATTCACGACATAAAGAAAAAAATAATCGTCCATTAAACAGTGATAATAAATAC
AATGAACCTATTGATCGTTTTATTTATAATGTAAACATTGCTAGAAATAATACTGAACTCACTGTCGCTCTTAGCAACCT
AAAACGTCAAGACCCATTTAATTTACTTGGTATTGATTATAATAATTTTAATTTAAGCGCGTTAAATTTAAAGTATCAAG
AATTGCTTGATGGGATTAAAAGCCCATCAATTCTTTTTACAACAAATTTAATGAAACATTGTAATTGTCTTTTCATTTTA
CGAGATGAACATGGGGTGGCAATCTATAATAATCAAAAACATATCGACTACCTTGGATGTAGCTTAGTCGGAATGCCAGT
TGACGAAGTGTTGGCCAGATATCCTGACTATCAGACCTGCTTGCAACTTGACCAACAATTATTAAACAAAAGCTCAGATA
TTCTGATTTCCAATGAGACGGTAGAAGTAGGAAGTTGCACACAACACTTTCATACTTATAGACAGAAAATTAAATATTTT
GATAAAACTTTCATTATGACTTTCGTCTATGAAGATGATCAAGAAGGAAATGCTGCGATAGACCCATTAACAGGCTGTTT
TACAAAGATAAAGTTAAATCACATAGACACAAATTTGTATAACACCATGGCGTTTATTGATTTGGACGGTTTTAAAAGCA
TTAATGACGAGTTCGGACATCAGTGTGGTGATCTACAACTCAAAGAAGGTGCACGTTTAATTAATAAATACTTAAGAAAA
GAAGATTTATTAATTCGTTTTGGTGGAGATGAGTTTATTTTATGCTTTGATTCAACCTCCACAACAAACATAAATAAAAA
ATTAGCCGCTATACGAACGAGTTTTGAAGAACATTTTCAACAAAAAGGTCTAGATTTATCCTTCTCTTTTGGTGTCTCTT
CAATAGAACACGACGTAAAAAGTGCGTTAGAGCAAGCTGATAAAGCGATGTACATTAACAAGCGGAAACGCAAGAAGTCG
AAGAAAAATAAGCTTCACCCAGCATGA

Upstream 100 bases:

>100_bases
ATAAATGTGATCAATGTCTTGATTTGTACTATAAATATTCAAAGGCAATATAAATAAAGCGTGCTACATTAGCGACAATT
TTTCTAGTAAAATAATAACG

Downstream 100 bases:

>100_bases
AGCTTATTTTTATTTAATAAATTACAATCCACCAGTCACATCAATCACATGAAAACGCCCTGAATCGAGTGGGCGTTTCA
CCTCTTCTTTTTGATTAAAA

Product: GGDEF/EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 568; Mature: 568

Protein sequence:

>568_residues
MIMNKYFIYQPNFFEGSIVSYEALIRFKDSTILPNEFIESLEDKTSFDKEVVSHVISDKLTLKNNENIHISINVFAKSLE
SNEFVEHCEQIFSQHQGFTLELNFKNQVYELEKIKQNMSRLKALGVLFTLDDYGTECKHSDPLLGLNFDYIKIDRALIST
ISDDYLSFCFLRSLYHKLHKFLGYKVAIKGIENINQLNLINSFGSVISQGYHLSYPLELNELNSRHKEKNNRPLNSDNKY
NEPIDRFIYNVNIARNNTELTVALSNLKRQDPFNLLGIDYNNFNLSALNLKYQELLDGIKSPSILFTTNLMKHCNCLFIL
RDEHGVAIYNNQKHIDYLGCSLVGMPVDEVLARYPDYQTCLQLDQQLLNKSSDILISNETVEVGSCTQHFHTYRQKIKYF
DKTFIMTFVYEDDQEGNAAIDPLTGCFTKIKLNHIDTNLYNTMAFIDLDGFKSINDEFGHQCGDLQLKEGARLINKYLRK
EDLLIRFGGDEFILCFDSTSTTNINKKLAAIRTSFEEHFQQKGLDLSFSFGVSSIEHDVKSALEQADKAMYINKRKRKKS
KKNKLHPA

Sequences:

>Translated_568_residues
MIMNKYFIYQPNFFEGSIVSYEALIRFKDSTILPNEFIESLEDKTSFDKEVVSHVISDKLTLKNNENIHISINVFAKSLE
SNEFVEHCEQIFSQHQGFTLELNFKNQVYELEKIKQNMSRLKALGVLFTLDDYGTECKHSDPLLGLNFDYIKIDRALIST
ISDDYLSFCFLRSLYHKLHKFLGYKVAIKGIENINQLNLINSFGSVISQGYHLSYPLELNELNSRHKEKNNRPLNSDNKY
NEPIDRFIYNVNIARNNTELTVALSNLKRQDPFNLLGIDYNNFNLSALNLKYQELLDGIKSPSILFTTNLMKHCNCLFIL
RDEHGVAIYNNQKHIDYLGCSLVGMPVDEVLARYPDYQTCLQLDQQLLNKSSDILISNETVEVGSCTQHFHTYRQKIKYF
DKTFIMTFVYEDDQEGNAAIDPLTGCFTKIKLNHIDTNLYNTMAFIDLDGFKSINDEFGHQCGDLQLKEGARLINKYLRK
EDLLIRFGGDEFILCFDSTSTTNINKKLAAIRTSFEEHFQQKGLDLSFSFGVSSIEHDVKSALEQADKAMYINKRKRKKS
KKNKLHPA
>Mature_568_residues
MIMNKYFIYQPNFFEGSIVSYEALIRFKDSTILPNEFIESLEDKTSFDKEVVSHVISDKLTLKNNENIHISINVFAKSLE
SNEFVEHCEQIFSQHQGFTLELNFKNQVYELEKIKQNMSRLKALGVLFTLDDYGTECKHSDPLLGLNFDYIKIDRALIST
ISDDYLSFCFLRSLYHKLHKFLGYKVAIKGIENINQLNLINSFGSVISQGYHLSYPLELNELNSRHKEKNNRPLNSDNKY
NEPIDRFIYNVNIARNNTELTVALSNLKRQDPFNLLGIDYNNFNLSALNLKYQELLDGIKSPSILFTTNLMKHCNCLFIL
RDEHGVAIYNNQKHIDYLGCSLVGMPVDEVLARYPDYQTCLQLDQQLLNKSSDILISNETVEVGSCTQHFHTYRQKIKYF
DKTFIMTFVYEDDQEGNAAIDPLTGCFTKIKLNHIDTNLYNTMAFIDLDGFKSINDEFGHQCGDLQLKEGARLINKYLRK
EDLLIRFGGDEFILCFDSTSTTNINKKLAAIRTSFEEHFQQKGLDLSFSFGVSSIEHDVKSALEQADKAMYINKRKRKKS
KKNKLHPA

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=121, Percent_Identity=36.3636363636364, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87081977, Length=185, Percent_Identity=31.3513513513514, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787802, Length=151, Percent_Identity=31.1258278145695, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1788381, Length=124, Percent_Identity=34.6774193548387, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI145693134, Length=121, Percent_Identity=30.5785123966942, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787541, Length=128, Percent_Identity=33.59375, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 65681; Mature: 65681

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMNKYFIYQPNFFEGSIVSYEALIRFKDSTILPNEFIESLEDKTSFDKEVVSHVISDKL
CCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCE
TLKNNENIHISINVFAKSLESNEFVEHCEQIFSQHQGFTLELNFKNQVYELEKIKQNMSR
EEECCCEEEEEEEEEEHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHH
LKALGVLFTLDDYGTECKHSDPLLGLNFDYIKIDRALISTISDDYLSFCFLRSLYHKLHK
HHHHHEEEEECCCCCCCCCCCCEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGYKVAIKGIENINQLNLINSFGSVISQGYHLSYPLELNELNSRHKEKNNRPLNSDNKY
HHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCEEHHHHHHHHHHHCCCCCCCCCCC
NEPIDRFIYNVNIARNNTELTVALSNLKRQDPFNLLGIDYNNFNLSALNLKYQELLDGIK
CCCHHHHEEEEEEECCCCEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCHHHHHHHCC
SPSILFTTNLMKHCNCLFILRDEHGVAIYNNQKHIDYLGCSLVGMPVDEVLARYPDYQTC
CCCEEEEHHHHHHCCEEEEEECCCCEEEECCCCCEEEECCEEECCCHHHHHHHCCCHHHH
LQLDQQLLNKSSDILISNETVEVGSCTQHFHTYRQKIKYFDKTFIMTFVYEDDQEGNAAI
HHHHHHHHCCCCCEEEECCEEECCHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCC
DPLTGCFTKIKLNHIDTNLYNTMAFIDLDGFKSINDEFGHQCGDLQLKEGARLINKYLRK
CCHHHHHHEEEEEECCCCHHHEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCC
EDLLIRFGGDEFILCFDSTSTTNINKKLAAIRTSFEEHFQQKGLDLSFSFGVSSIEHDVK
CCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH
SALEQADKAMYINKRKRKKSKKNKLHPA
HHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIMNKYFIYQPNFFEGSIVSYEALIRFKDSTILPNEFIESLEDKTSFDKEVVSHVISDKL
CCCCEEEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCE
TLKNNENIHISINVFAKSLESNEFVEHCEQIFSQHQGFTLELNFKNQVYELEKIKQNMSR
EEECCCEEEEEEEEEEHHCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHH
LKALGVLFTLDDYGTECKHSDPLLGLNFDYIKIDRALISTISDDYLSFCFLRSLYHKLHK
HHHHHEEEEECCCCCCCCCCCCEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLGYKVAIKGIENINQLNLINSFGSVISQGYHLSYPLELNELNSRHKEKNNRPLNSDNKY
HHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEECCEEHHHHHHHHHHHCCCCCCCCCCC
NEPIDRFIYNVNIARNNTELTVALSNLKRQDPFNLLGIDYNNFNLSALNLKYQELLDGIK
CCCHHHHEEEEEEECCCCEEEEEECCCCCCCCCEEEEEEECCCEEEEECCCHHHHHHHCC
SPSILFTTNLMKHCNCLFILRDEHGVAIYNNQKHIDYLGCSLVGMPVDEVLARYPDYQTC
CCCEEEEHHHHHHCCEEEEEECCCCEEEECCCCCEEEECCEEECCCHHHHHHHCCCHHHH
LQLDQQLLNKSSDILISNETVEVGSCTQHFHTYRQKIKYFDKTFIMTFVYEDDQEGNAAI
HHHHHHHHCCCCCEEEECCEEECCHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCC
DPLTGCFTKIKLNHIDTNLYNTMAFIDLDGFKSINDEFGHQCGDLQLKEGARLINKYLRK
CCHHHHHHEEEEEECCCCHHHEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCC
EDLLIRFGGDEFILCFDSTSTTNINKKLAAIRTSFEEHFQQKGLDLSFSFGVSSIEHDVK
CCEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH
SALEQADKAMYINKRKRKKSKKNKLHPA
HHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]