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The map label for this gene is wbfD [H]

Identifier: 172087643

GI number: 172087643

Start: 178353

End: 179027

Strand: Reverse

Name: wbfD [H]

Synonym: VF_0160

Alternate gene names: 172087643

Gene position: 179027-178353 (Counterclockwise)

Preceding gene: 59710768

Following gene: 59710765

Centisome position: 6.18

GC content: 37.33

Gene sequence:

>675_bases
GTGTTTAAATCCCTTGTTACTTTTCTCTCTATCTTTCTGCTTTCTGCCTGTACTCCAAAATTTAATGACGTAAATGCAAC
GTTAGATGAAGCGTTTTTTGGTGCCGATGACGTGGTTTTATCAAAGCAGCAGATTATCGAATTGCCTTATGCCAGCAGCT
TTGTTCGCATTAATGGTGGAGCTAACCTGTTTATGGTGTTGGCTTTTGCAGAGAAGAACCCTGCGACTGGGGCGATGCAA
TTAAAATGGCTTTCTTCTGATAAAGCGATGATAGTGACTGAGGGGGGACGCATTGTTAAAACATTGGGATTGGCTGAAGC
GAACCTATCAAATATCACTCCCGTTTCTTCTTCCTCTTTGCCTTCTTTAGCGTCTATTTCAAAAAATCAAACCACTTGGT
CTGCACACTATGATTGGATGTTAAATGATCATTATTTATTTAACTATAAAGCAAATATCACCCCGGTATTAAGAGAAAAA
TCCACTATAGAAACAACAATTTGGAACAAAGATGTAACAGAAGTTGTTGAGGTAATATCCATCCCTTCTCTTGATTATTC
TTTTACAAACCAATACTGGTTAGATGAGCAATTTAATGTAGTAAAAACCCATCAATATTTAGGTCCTGATATTGGTGATA
TTGAAATGACGATACTGAAGCCTTTTGCTTTGTAA

Upstream 100 bases:

>100_bases
GAGGGATGAGGAACTAAATTCTAGGCTCTCACTTTCGTCCCTTTTTACTTATATCTCGCCCTCTAAACCAACCTAACTAT
TTATAAATAAAGAGTTTATT

Downstream 100 bases:

>100_bases
GCTCGTTAATAACCCAATTAATTAGTATTTAAAGGAACCGTCATGCATTTTCTTTCTTCATTCGTTTTTTCTTTGCTTTT
GTCTGCATCAACAGTTACTT

Product: WbfD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MFKSLVTFLSIFLLSACTPKFNDVNATLDEAFFGADDVVLSKQQIIELPYASSFVRINGGANLFMVLAFAEKNPATGAMQ
LKWLSSDKAMIVTEGGRIVKTLGLAEANLSNITPVSSSSLPSLASISKNQTTWSAHYDWMLNDHYLFNYKANITPVLREK
STIETTIWNKDVTEVVEVISIPSLDYSFTNQYWLDEQFNVVKTHQYLGPDIGDIEMTILKPFAL

Sequences:

>Translated_224_residues
MFKSLVTFLSIFLLSACTPKFNDVNATLDEAFFGADDVVLSKQQIIELPYASSFVRINGGANLFMVLAFAEKNPATGAMQ
LKWLSSDKAMIVTEGGRIVKTLGLAEANLSNITPVSSSSLPSLASISKNQTTWSAHYDWMLNDHYLFNYKANITPVLREK
STIETTIWNKDVTEVVEVISIPSLDYSFTNQYWLDEQFNVVKTHQYLGPDIGDIEMTILKPFAL
>Mature_224_residues
MFKSLVTFLSIFLLSACTPKFNDVNATLDEAFFGADDVVLSKQQIIELPYASSFVRINGGANLFMVLAFAEKNPATGAMQ
LKWLSSDKAMIVTEGGRIVKTLGLAEANLSNITPVSSSSLPSLASISKNQTTWSAHYDWMLNDHYLFNYKANITPVLREK
STIETTIWNKDVTEVVEVISIPSLDYSFTNQYWLDEQFNVVKTHQYLGPDIGDIEMTILKPFAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ymcC [H]

Homologues:

Organism=Escherichia coli, GI87082360, Length=220, Percent_Identity=31.3636363636364, Blast_Score=97, Evalue=9e-22,
Organism=Escherichia coli, GI1787221, Length=223, Percent_Identity=29.1479820627803, Blast_Score=92, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021308 [H]

Pfam domain/function: PF11102 DUF2886 [H]

EC number: NA

Molecular weight: Translated: 24993; Mature: 24993

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKSLVTFLSIFLLSACTPKFNDVNATLDEAFFGADDVVLSKQQIIELPYASSFVRINGG
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEECHHHHEECCCCCCEEEECCC
ANLFMVLAFAEKNPATGAMQLKWLSSDKAMIVTEGGRIVKTLGLAEANLSNITPVSSSSL
CCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCC
PSLASISKNQTTWSAHYDWMLNDHYLFNYKANITPVLREKSTIETTIWNKDVTEVVEVIS
CCHHHCCCCCEEEEEEEEEEECCEEEEEEECCCCEEECCCCCEEEEECCCCHHHHHHHHH
IPSLDYSFTNQYWLDEQFNVVKTHQYLGPDIGDIEMTILKPFAL
CCCCCCCCCCCEECCCCCCEEEEHHHCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MFKSLVTFLSIFLLSACTPKFNDVNATLDEAFFGADDVVLSKQQIIELPYASSFVRINGG
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCEEECHHHHEECCCCCCEEEECCC
ANLFMVLAFAEKNPATGAMQLKWLSSDKAMIVTEGGRIVKTLGLAEANLSNITPVSSSSL
CCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCC
PSLASISKNQTTWSAHYDWMLNDHYLFNYKANITPVLREKSTIETTIWNKDVTEVVEVIS
CCHHHCCCCCEEEEEEEEEEECCEEEEEEECCCCEEECCCCCEEEEECCCCHHHHHHHHH
IPSLDYSFTNQYWLDEQFNVVKTHQYLGPDIGDIEMTILKPFAL
CCCCCCCCCCCEECCCCCCEEEEHHHCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]