| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
Click here to switch to the map view.
The map label for this gene is pstS [H]
Identifier: 170757827
GI number: 170757827
Start: 485368
End: 486279
Strand: Direct
Name: pstS [H]
Synonym: CLD_0365
Alternate gene names: 170757827
Gene position: 485368-486279 (Clockwise)
Preceding gene: 170755215
Following gene: 170755547
Centisome position: 12.26
GC content: 33.22
Gene sequence:
>912_bases ATGAAAAAAAAGCTTAGTGTAGTGTTAAGTGTTTTATTAACATCTGCGTTACTTTTTACTGCCTGTGGAGGCAAACAAAC TTCTAATAGCAATGAAGAATCTTCAAAAAAAGAATCAGGCAAAATAATGTGTATAGGTTCTTCAACTTTAGCTCCAGTAG TTTCTAAAGCAGGGGATACTTTAAAATCTAAACACGGTACATGGAAAAAGATGAATGATAAACTTCCAGATGAAAACATA GAGTTAGCAGTATCTTCAGGGGGATCTGGAGCAGGGGTAAAGGCTGCTTTAGAAAAAACAGCTAATTTTGGTTTAATATC TAGAGAAGTTAGCAAAGATGAAAAGGCCAAGATGAAAGAATACAATGAAATAAAAATAGGATATGATGCACTAACACTTT CAGTTAATCCTCAAAATCCAATATTAAAAAATAAAAAAGGTCTTACATCAGAAGAGATTCAAAAAATATTCTCTGGTGAA GCTAAAACGTGGAAAGATGTAGATCCTTCACTCCCAGCTAATAAGATAGTACTTGTAGTTAGAGATGCTGGCGGTGGAGC TGCAGAAGTATTCCAAAAGGCTGTTATGGGAGATAAAAAAGTAAGTAAAGATGCTGTACAAGCACCTTCTATGGGAGCAT TAACTCAAAAGGTTATAGAAAATAAGGATGCTATAGGATATGCTTCAGTAGGCCTTGTAGATCAAAATAAAGGGAAGTTA ACACCAATGGAAGTTGATGGTATAGCTCCAACAAAGGAAAATATAACTAGTGGTAAATATAAAATAGCTAGACCACTTTT ACTTATAAAAGATGGTAAGCTTACAGGAGTAGAACAAACTTTTGTAGATTTCTTAAAATCTGAAGAGGGTTTAAAAATAA TTGATGAATCAGGTTTTGTTTCTATAAAATAA
Upstream 100 bases:
>100_bases TAATATAACTAATGATGTAAATATTATGCTAAAATACTATGTGAGACAGGGATTTAACATATATTAACTTAATAGGTAAT ATTACAAGGGAGGAATATTT
Downstream 100 bases:
>100_bases ATTCAAGTTTTTCAGAAGTTCTTATTTGTTTTAAGTTGTGTGTTAATTATATAAGTTATTTTAAGCTTATGATTAACGTG TATACTTTAAAGCAGATTAG
Product: phosphate ABC transporter phosphate-binding protein
Products: NA
Alternate protein names: PBP [H]
Number of amino acids: Translated: 303; Mature: 303
Protein sequence:
>303_residues MKKKLSVVLSVLLTSALLFTACGGKQTSNSNEESSKKESGKIMCIGSSTLAPVVSKAGDTLKSKHGTWKKMNDKLPDENI ELAVSSGGSGAGVKAALEKTANFGLISREVSKDEKAKMKEYNEIKIGYDALTLSVNPQNPILKNKKGLTSEEIQKIFSGE AKTWKDVDPSLPANKIVLVVRDAGGGAAEVFQKAVMGDKKVSKDAVQAPSMGALTQKVIENKDAIGYASVGLVDQNKGKL TPMEVDGIAPTKENITSGKYKIARPLLLIKDGKLTGVEQTFVDFLKSEEGLKIIDESGFVSIK
Sequences:
>Translated_303_residues MKKKLSVVLSVLLTSALLFTACGGKQTSNSNEESSKKESGKIMCIGSSTLAPVVSKAGDTLKSKHGTWKKMNDKLPDENI ELAVSSGGSGAGVKAALEKTANFGLISREVSKDEKAKMKEYNEIKIGYDALTLSVNPQNPILKNKKGLTSEEIQKIFSGE AKTWKDVDPSLPANKIVLVVRDAGGGAAEVFQKAVMGDKKVSKDAVQAPSMGALTQKVIENKDAIGYASVGLVDQNKGKL TPMEVDGIAPTKENITSGKYKIARPLLLIKDGKLTGVEQTFVDFLKSEEGLKIIDESGFVSIK >Mature_303_residues MKKKLSVVLSVLLTSALLFTACGGKQTSNSNEESSKKESGKIMCIGSSTLAPVVSKAGDTLKSKHGTWKKMNDKLPDENI ELAVSSGGSGAGVKAALEKTANFGLISREVSKDEKAKMKEYNEIKIGYDALTLSVNPQNPILKNKKGLTSEEIQKIFSGE AKTWKDVDPSLPANKIVLVVRDAGGGAAEVFQKAVMGDKKVSKDAVQAPSMGALTQKVIENKDAIGYASVGLVDQNKGKL TPMEVDGIAPTKENITSGKYKIARPLLLIKDGKLTGVEQTFVDFLKSEEGLKIIDESGFVSIK
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32292; Mature: 32292
Theoretical pI: Translated: 9.88; Mature: 9.88
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKLSVVLSVLLTSALLFTACGGKQTSNSNEESSKKESGKIMCIGSSTLAPVVSKAGDT CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHCCHH LKSKHGTWKKMNDKLPDENIELAVSSGGSGAGVKAALEKTANFGLISREVSKDEKAKMKE HHHCCCCHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHHHHH YNEIKIGYDALTLSVNPQNPILKNKKGLTSEEIQKIFSGEAKTWKDVDPSLPANKIVLVV CCCEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE RDAGGGAAEVFQKAVMGDKKVSKDAVQAPSMGALTQKVIENKDAIGYASVGLVDQNKGKL ECCCCCHHHHHHHHHHCCCHHCHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCC TPMEVDGIAPTKENITSGKYKIARPLLLIKDGKLTGVEQTFVDFLKSEEGLKIIDESGFV CCEECCCCCCCCCCCCCCCEEEECEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCE SIK EEC >Mature Secondary Structure MKKKLSVVLSVLLTSALLFTACGGKQTSNSNEESSKKESGKIMCIGSSTLAPVVSKAGDT CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHCCHH LKSKHGTWKKMNDKLPDENIELAVSSGGSGAGVKAALEKTANFGLISREVSKDEKAKMKE HHHCCCCHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHHHHH YNEIKIGYDALTLSVNPQNPILKNKKGLTSEEIQKIFSGEAKTWKDVDPSLPANKIVLVV CCCEEEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE RDAGGGAAEVFQKAVMGDKKVSKDAVQAPSMGALTQKVIENKDAIGYASVGLVDQNKGKL ECCCCCHHHHHHHHHHCCCHHCHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCC TPMEVDGIAPTKENITSGKYKIARPLLLIKDGKLTGVEQTFVDFLKSEEGLKIIDESGFV CCEECCCCCCCCCCCCCCCEEEECEEEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCE SIK EEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA