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The map label for this gene is rhaR [H]

Identifier: 170757575

GI number: 170757575

Start: 2473507

End: 2474178

Strand: Reverse

Name: rhaR [H]

Synonym: CLD_2293

Alternate gene names: 170757575

Gene position: 2474178-2473507 (Counterclockwise)

Preceding gene: 170756721

Following gene: 170755105

Centisome position: 62.51

GC content: 28.87

Gene sequence:

>672_bases
ATGCAGATTAATGGAAGAAAACATCATAAGGTTGGATTTGGTTTTCCTTTAAATCATTATGAAGGAATCACGGTTGCTAT
ATATATTGAAGAGGCATTAAAAACATTATCGACTATTTTTCAGGGGTTTTCTATTGATTTGCAAGAGTTATATAATAAAT
TCTGTTATAAAGAATCCCCTTTTATTATGCGTGCAAAAGATTCAATTGAACATATTTTTTCTGAACTTTATAATGTACCT
AATGAGATACGCACAAATTATTTTAAAATCAAAATTTTAGAGTTGTTATTATTCTTAAGTGTAGTAGATGTAAAAGTAAA
GGGAGAGGAACGGCCATATTTTACTAAAAAGCAGGTTGGAACAGTAAAAAATATTATGAAATATATGACTGAGCATATAG
ATAAAAACTTTACATTAGAAGACTTGTCTAGTAAATTTGAGATACCACTAACTTCTATGAAAAATTATTTTAAAGGGGTT
TATGGAACATCAATATATTCTTATATGCGATCTTACAGAATGCAAGTGGCTGCTTTAATGCTACGGGAAACAAATGAAAA
TATTACCGTCATTGCAGGTAAAGTAGGTTACGAGAATTCTAGTAAATTTGCATCTGCATTTAAAAAAATTATGAATAGTT
TACCTTCCGAGTATCGAAGAAGGTTTATTTGA

Upstream 100 bases:

>100_bases
TATTCCCAAGGTGAAAATGATGGCAATAGATCATTGAAAAAAAGGACGTATTGAATGGGAATTTCAGAACGGTTCCTATA
TATATTTGCAAGAGGGAGAT

Downstream 100 bases:

>100_bases
ATAAAATACTGTTTGTAAATTGTCCTGAAGGTTATTTATTTTATTAATATATATGTTTATAAGCTCCTAAGGGCGTTTTT
CTAGGTGTTTAAGTTAGAAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: L-rhamnose operon transcriptional activator rhaR [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MQINGRKHHKVGFGFPLNHYEGITVAIYIEEALKTLSTIFQGFSIDLQELYNKFCYKESPFIMRAKDSIEHIFSELYNVP
NEIRTNYFKIKILELLLFLSVVDVKVKGEERPYFTKKQVGTVKNIMKYMTEHIDKNFTLEDLSSKFEIPLTSMKNYFKGV
YGTSIYSYMRSYRMQVAALMLRETNENITVIAGKVGYENSSKFASAFKKIMNSLPSEYRRRFI

Sequences:

>Translated_223_residues
MQINGRKHHKVGFGFPLNHYEGITVAIYIEEALKTLSTIFQGFSIDLQELYNKFCYKESPFIMRAKDSIEHIFSELYNVP
NEIRTNYFKIKILELLLFLSVVDVKVKGEERPYFTKKQVGTVKNIMKYMTEHIDKNFTLEDLSSKFEIPLTSMKNYFKGV
YGTSIYSYMRSYRMQVAALMLRETNENITVIAGKVGYENSSKFASAFKKIMNSLPSEYRRRFI
>Mature_223_residues
MQINGRKHHKVGFGFPLNHYEGITVAIYIEEALKTLSTIFQGFSIDLQELYNKFCYKESPFIMRAKDSIEHIFSELYNVP
NEIRTNYFKIKILELLLFLSVVDVKVKGEERPYFTKKQVGTVKNIMKYMTEHIDKNFTLEDLSSKFEIPLTSMKNYFKGV
YGTSIYSYMRSYRMQVAALMLRETNENITVIAGKVGYENSSKFASAFKKIMNSLPSEYRRRFI

Specific function: Activates expression of the rhaSR operon in response to L-rhamnose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 26144; Mature: 26144

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINGRKHHKVGFGFPLNHYEGITVAIYIEEALKTLSTIFQGFSIDLQELYNKFCYKESP
CCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
FIMRAKDSIEHIFSELYNVPNEIRTNYFKIKILELLLFLSVVDVKVKGEERPYFTKKQVG
EEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHH
TVKNIMKYMTEHIDKNFTLEDLSSKFEIPLTSMKNYFKGVYGTSIYSYMRSYRMQVAALM
HHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRETNENITVIAGKVGYENSSKFASAFKKIMNSLPSEYRRRFI
HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHCC
>Mature Secondary Structure
MQINGRKHHKVGFGFPLNHYEGITVAIYIEEALKTLSTIFQGFSIDLQELYNKFCYKESP
CCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
FIMRAKDSIEHIFSELYNVPNEIRTNYFKIKILELLLFLSVVDVKVKGEERPYFTKKQVG
EEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHH
TVKNIMKYMTEHIDKNFTLEDLSSKFEIPLTSMKNYFKGVYGTSIYSYMRSYRMQVAALM
HHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRETNENITVIAGKVGYENSSKFASAFKKIMNSLPSEYRRRFI
HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA