| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is spoIIIAA [H]
Identifier: 170757502
GI number: 170757502
Start: 2020257
End: 2021180
Strand: Reverse
Name: spoIIIAA [H]
Synonym: CLD_2742
Alternate gene names: 170757502
Gene position: 2021180-2020257 (Counterclockwise)
Preceding gene: 170754834
Following gene: 170754591
Centisome position: 51.06
GC content: 29.33
Gene sequence:
>924_bases TTGTATACAGAAGAGATTCTAAATATACTTCCAAGTCATATAAGTAGATTAATATGTGATTTAGATGAAGTAGATAAACT TCAAGAAATAAGGTTTAAAATTGGGAAACCTATATTTTTCCAAATAGGCAATACAGAGAAACTTGCATCTTATGAAGTGA AAAGAGAGGATATAAAATCTATAGTTCAAAGAATGAGTAATTATTCTATTTATAGTTTTGAAGAAGAAATAAAACAGGGA TATCTAACTATAAAAGGCGGTCATAGAGTTGGCATATGTGGTAGATGTGTAATAGATGAAGGCAAAGTTAAAACTATAAG AGATATAAGTTCCTTAAATATAAGAATTTGTAGAGAAATATATAATGCCTCAAAGCTAGTTATGCCCTATATAGTAGAAA ATGGACATGTTTTAAATACTATAATAATTTCTCCTCCTAAATGTGGAAAGACCACTATAATAAGGGATATATCTAAAAAA ATATCTGACGGAGTGGATGCGTTAAATTTAAAAGGAAAAAAGGTATCTGTTATAGATGAAAGAAGTGAAATAGCTGGGAG CTATAATGGTGTTCCTCAATTAGATGTAGGTTTAAGGACGGATGTCTTAGATAATTGTCCTAAAAGTGAAGGCATAGTAA TGGCTATAAGAAGTATGGCACCAGAAGTAATAATATGTGATGAAATAGGAACCTATAATGATGTAGAAAGTATACTTATC GCTTTAAATTCAGGAGTCAGCCTGATAACAACCATACATGGCTTTGGAGTAGAAGATATTTACAATAGACCCGTTTTTAA AGAAATAGTAGAAAATAAAGTTTTTAAAAGAGCTATAGTTTTAAGCTCTAAAAAATCTGTAGGTACTTTAGAGTATGTAT ATGATTTTAATAAGAAAACCAAGCTTTACTGTAGGATAATTTAA
Upstream 100 bases:
>100_bases AATAAAACAAAGGAGGAATTAGTAATTATTTTAATAAAGTTTTTGGAATAATTTTGTTAAGTTTGAAATAGATATTTTAT AAAGAAAGGAGATGATAAAT
Downstream 100 bases:
>100_bases TAAAAACTTTTCTTAGAAATAGGAGTGTACAAAACTATGTTTAAAATTTTAGGAAGTTTATTAATTTTTGTTGGAAGTTT ATATTGGGGTATAACTACTG
Product: stage III sporulation protein AA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 307
Protein sequence:
>307_residues MYTEEILNILPSHISRLICDLDEVDKLQEIRFKIGKPIFFQIGNTEKLASYEVKREDIKSIVQRMSNYSIYSFEEEIKQG YLTIKGGHRVGICGRCVIDEGKVKTIRDISSLNIRICREIYNASKLVMPYIVENGHVLNTIIISPPKCGKTTIIRDISKK ISDGVDALNLKGKKVSVIDERSEIAGSYNGVPQLDVGLRTDVLDNCPKSEGIVMAIRSMAPEVIICDEIGTYNDVESILI ALNSGVSLITTIHGFGVEDIYNRPVFKEIVENKVFKRAIVLSSKKSVGTLEYVYDFNKKTKLYCRII
Sequences:
>Translated_307_residues MYTEEILNILPSHISRLICDLDEVDKLQEIRFKIGKPIFFQIGNTEKLASYEVKREDIKSIVQRMSNYSIYSFEEEIKQG YLTIKGGHRVGICGRCVIDEGKVKTIRDISSLNIRICREIYNASKLVMPYIVENGHVLNTIIISPPKCGKTTIIRDISKK ISDGVDALNLKGKKVSVIDERSEIAGSYNGVPQLDVGLRTDVLDNCPKSEGIVMAIRSMAPEVIICDEIGTYNDVESILI ALNSGVSLITTIHGFGVEDIYNRPVFKEIVENKVFKRAIVLSSKKSVGTLEYVYDFNKKTKLYCRII >Mature_307_residues MYTEEILNILPSHISRLICDLDEVDKLQEIRFKIGKPIFFQIGNTEKLASYEVKREDIKSIVQRMSNYSIYSFEEEIKQG YLTIKGGHRVGICGRCVIDEGKVKTIRDISSLNIRICREIYNASKLVMPYIVENGHVLNTIIISPPKCGKTTIIRDISKK ISDGVDALNLKGKKVSVIDERSEIAGSYNGVPQLDVGLRTDVLDNCPKSEGIVMAIRSMAPEVIICDEIGTYNDVESILI ALNSGVSLITTIHGFGVEDIYNRPVFKEIVENKVFKRAIVLSSKKSVGTLEYVYDFNKKTKLYCRII
Specific function: Unknown
COG id: COG3854
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR014217 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34563; Mature: 34563
Theoretical pI: Translated: 8.18; Mature: 8.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYTEEILNILPSHISRLICDLDEVDKLQEIRFKIGKPIFFQIGNTEKLASYEVKREDIKS CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH IVQRMSNYSIYSFEEEIKQGYLTIKGGHRVGICGRCVIDEGKVKTIRDISSLNIRICREI HHHHHHCCCEEEHHHHHHCCEEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH YNASKLVMPYIVENGHVLNTIIISPPKCGKTTIIRDISKKISDGVDALNLKGKKVSVIDE HCCCCEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEECCCCEEEEECC RSEIAGSYNGVPQLDVGLRTDVLDNCPKSEGIVMAIRSMAPEVIICDEIGTYNDVESILI HHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEHHHCCCEEEECCCCCCHHHHHHHH ALNSGVSLITTIHGFGVEDIYNRPVFKEIVENKVFKRAIVLSSKKSVGTLEYVYDFNKKT HHCCCCEEEEEHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCE KLYCRII EEEEEEC >Mature Secondary Structure MYTEEILNILPSHISRLICDLDEVDKLQEIRFKIGKPIFFQIGNTEKLASYEVKREDIKS CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHH IVQRMSNYSIYSFEEEIKQGYLTIKGGHRVGICGRCVIDEGKVKTIRDISSLNIRICREI HHHHHHCCCEEEHHHHHHCCEEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHH YNASKLVMPYIVENGHVLNTIIISPPKCGKTTIIRDISKKISDGVDALNLKGKKVSVIDE HCCCCEEEEEEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEECCCCEEEEECC RSEIAGSYNGVPQLDVGLRTDVLDNCPKSEGIVMAIRSMAPEVIICDEIGTYNDVESILI HHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEEHHHCCCEEEECCCCCCHHHHHHHH ALNSGVSLITTIHGFGVEDIYNRPVFKEIVENKVFKRAIVLSSKKSVGTLEYVYDFNKKT HHCCCCEEEEEHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCE KLYCRII EEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1766372; 8969508; 9384377 [H]