Click here to switch to the map view.

The map label for this gene is kdgT

Identifier: 170757488

GI number: 170757488

Start: 309293

End: 310267

Strand: Direct

Name: kdgT

Synonym: CLD_0517

Alternate gene names: 170757488

Gene position: 309293-310267 (Clockwise)

Preceding gene: 170754503

Following gene: 170756137

Centisome position: 7.81

GC content: 35.18

Gene sequence:

>975_bases
ATGCAAATTCCAATTAAGAAAACTCTTGATAAAATTCCAGGTGGAATGATGGTTGTTCCTCTTTTCTTAGGGGTATTAGT
TAATACATTTTTCCCACAATTTTTACAAATCGGTGGATTTACAACTGCATTATTTAGTGCAAAAGCATCATCAACAATTT
TAGCTTGTTTTATGTTTTTAATTGGTTCACAAATTAACTTTAAATTAGCACCAAAAGCAATAAAAAAAGGCGCAATATTA
ATAGCAGGAAAATTTATAGTAGGTGCTGGTATTGGTATATTTGTAGGAAAAGTTTTTGGTCCTGCTGGAGTGTTAGGTTT
ATCGCCATTAGCAATTCTTTCAGCACTAACAAATTGTAATGGTGGATTATATGCATCTCTTGCTTCACAGTATGGTGACG
AAACTGATGTAGGTGCTTATGCTTTATTGTCTTTAAAAGATGGTCCATTCTTTACATTAGTTGCATTAGGGGCGTCAGGA
CTTGCTCAAGTTCCTATTATGGCACTTGTAGCAGTAATGATTCCAATAGTAATAGGAATGATTTTAGGAAACTTGGATCC
AGATATGAGAAAATTCCTTGGAAGCAGTAAAATGTTATTAATTCCATTTTTCTCTTTCCCATTAGGAGCAGGAATGAATC
TTGAAACTATTGTAAAAGCTGGAGGACCTGGAATATTATTAGGAATAATAGCTGCCTTTACTGGAATAGGAGCTTATGTA
CTTTTGAAATTATTTAAAGAAGAACCTATAATTGGGTTAGCAACAGGATCAACTGCAGGGAATGCTGTAGCAACGCCAGC
GGCAGTTGCAGCGGCAGATCCAACATTAGCTGTTGTAGCAACAGTAGCTACTGCACAAGTGGCAGCAGCATGTGTAATAT
CTGCTATACTTTGTCCATTCATTGTTTCTTATGTGTTCGGAAGGCTTAATAAGAATAAAATGAAAAAATTAAACAATGAA
GCTACTGCAGGATAA

Upstream 100 bases:

>100_bases
ATCTTCGATTTGGTGCGAATCGCTTTCACAGAGTGCGATGAGAGTATTAGAGTGGGTAGTCATCGGATAAAAATTATTTT
AAAGGAATGGAGGTTAAAGA

Downstream 100 bases:

>100_bases
AAATAACTGTTTGGATTTTTATATAAGTATATAAATGGTAAATTAAACATGAGAAAATAAAAGACAATAGCAGAAAAAAT
ACTATATAATAAGATTAGAA

Product: 2-keto-3-deoxygluconate permease

Products: Proton [Cytoplasm]; 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

Alternate protein names: KDG permease 2 [H]

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MQIPIKKTLDKIPGGMMVVPLFLGVLVNTFFPQFLQIGGFTTALFSAKASSTILACFMFLIGSQINFKLAPKAIKKGAIL
IAGKFIVGAGIGIFVGKVFGPAGVLGLSPLAILSALTNCNGGLYASLASQYGDETDVGAYALLSLKDGPFFTLVALGASG
LAQVPIMALVAVMIPIVIGMILGNLDPDMRKFLGSSKMLLIPFFSFPLGAGMNLETIVKAGGPGILLGIIAAFTGIGAYV
LLKLFKEEPIIGLATGSTAGNAVATPAAVAAADPTLAVVATVATAQVAAACVISAILCPFIVSYVFGRLNKNKMKKLNNE
ATAG

Sequences:

>Translated_324_residues
MQIPIKKTLDKIPGGMMVVPLFLGVLVNTFFPQFLQIGGFTTALFSAKASSTILACFMFLIGSQINFKLAPKAIKKGAIL
IAGKFIVGAGIGIFVGKVFGPAGVLGLSPLAILSALTNCNGGLYASLASQYGDETDVGAYALLSLKDGPFFTLVALGASG
LAQVPIMALVAVMIPIVIGMILGNLDPDMRKFLGSSKMLLIPFFSFPLGAGMNLETIVKAGGPGILLGIIAAFTGIGAYV
LLKLFKEEPIIGLATGSTAGNAVATPAAVAAADPTLAVVATVATAQVAAACVISAILCPFIVSYVFGRLNKNKMKKLNNE
ATAG
>Mature_324_residues
MQIPIKKTLDKIPGGMMVVPLFLGVLVNTFFPQFLQIGGFTTALFSAKASSTILACFMFLIGSQINFKLAPKAIKKGAIL
IAGKFIVGAGIGIFVGKVFGPAGVLGLSPLAILSALTNCNGGLYASLASQYGDETDVGAYALLSLKDGPFFTLVALGASG
LAQVPIMALVAVMIPIVIGMILGNLDPDMRKFLGSSKMLLIPFFSFPLGAGMNLETIVKAGGPGILLGIIAAFTGIGAYV
LLKLFKEEPIIGLATGSTAGNAVATPAAVAAADPTLAVVATVATAQVAAACVISAILCPFIVSYVFGRLNKNKMKKLNNE
ATAG

Specific function: The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdgT transporter family [H]

Homologues:

Organism=Escherichia coli, GI87082349, Length=328, Percent_Identity=35.9756097560976, Blast_Score=167, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004684
- ProDom:   PD024513 [H]

Pfam domain/function: PF03812 KdgT [H]

EC number: NA

Molecular weight: Translated: 33146; Mature: 33146

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIPIKKTLDKIPGGMMVVPLFLGVLVNTFFPQFLQIGGFTTALFSAKASSTILACFMFL
CCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
IGSQINFKLAPKAIKKGAILIAGKFIVGAGIGIFVGKVFGPAGVLGLSPLAILSALTNCN
HCCCCCEEECHHHHHCCEEEEECHHHHHCCHHHHHHHHHCCCHHHHCCHHHHHHHHHCCC
GGLYASLASQYGDETDVGAYALLSLKDGPFFTLVALGASGLAQVPIMALVAVMIPIVIGM
CCHHHHHHHHCCCCCCCCCEEEEEECCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ILGNLDPDMRKFLGSSKMLLIPFFSFPLGAGMNLETIVKAGGPGILLGIIAAFTGIGAYV
HHCCCCHHHHHHHCCCCEEEEEEHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH
LLKLFKEEPIIGLATGSTAGNAVATPAAVAAADPTLAVVATVATAQVAAACVISAILCPF
HHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IVSYVFGRLNKNKMKKLNNEATAG
HHHHHHHCCCHHHHHHHCCCCCCC
>Mature Secondary Structure
MQIPIKKTLDKIPGGMMVVPLFLGVLVNTFFPQFLQIGGFTTALFSAKASSTILACFMFL
CCCCHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
IGSQINFKLAPKAIKKGAILIAGKFIVGAGIGIFVGKVFGPAGVLGLSPLAILSALTNCN
HCCCCCEEECHHHHHCCEEEEECHHHHHCCHHHHHHHHHCCCHHHHCCHHHHHHHHHCCC
GGLYASLASQYGDETDVGAYALLSLKDGPFFTLVALGASGLAQVPIMALVAVMIPIVIGM
CCHHHHHHHHCCCCCCCCCEEEEEECCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHH
ILGNLDPDMRKFLGSSKMLLIPFFSFPLGAGMNLETIVKAGGPGILLGIIAAFTGIGAYV
HHCCCCHHHHHHHCCCCEEEEEEHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH
LLKLFKEEPIIGLATGSTAGNAVATPAAVAAADPTLAVVATVATAQVAAACVISAILCPF
HHHHHHCCCEEEEECCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IVSYVFGRLNKNKMKKLNNEATAG
HHHHHHHCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Proton [Periplasm]; 2-dehydro-3-deoxy-D-gluconate [Periplasm] [C]

Specific reaction: Proton [Periplasm] + 2-dehydro-3-deoxy-D-gluconate [Periplasm] = Proton [Cytoplasm] + 2-dehydro-3-deoxy-D-gluconate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]