| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is yibD [C]
Identifier: 170757445
GI number: 170757445
Start: 2900057
End: 2902162
Strand: Reverse
Name: yibD [C]
Synonym: CLD_1844
Alternate gene names: 170757445
Gene position: 2902162-2900057 (Counterclockwise)
Preceding gene: 170755201
Following gene: 170756636
Centisome position: 73.32
GC content: 21.65
Gene sequence:
>2106_bases ATGAAACTTAGCATTGCTATGATAGTAAAAAATGAGGAGAAAAATTTAGAAAGAACATTAATACCTTTAAAAAAATTAAA AGAATATATAGATGTAGAGATTGTTATTGTAGATACTGGTTCTACAGATAATACTATAAAAATTGCAAAGAAATATACGG ATAAGGTGTATTTACATATATGGAATAATGATTTTGCAGCTATGAGAAATATTTCTATAGATTATTGTACCGGAGATTGG ATATTAGTACTAGATGCAGACGAAGCTCTTTATGACATTAAAGATTTAGGAGAATTGTTTAACAGAAATATTATACATAA GTACAATAGTGCTTTCATAAAAATAGTAAATTTTAATAAAAATATCGAAAATTCTATAAATAATGAAAACATTGCTCCAT TACTAAGAATTTTTAAAAGAAATACTGTAAAATATGAAGGTATTGTTCATGAACAACCTGATTTTAAAGCACCTGTTTTA AATACAAATATTAGATTTATACATTATGGTTATGATAATGATGATTACGAATTAATGGAGTGTAAATTTAAAAGAAACAT AGAATTGCTTTTTAAGCAATTAAGAGATAACCCAGAAGATATTTATGTTAATTTTCAGATAGCTACATCATATGCCATGC ATAAAGATTTAAAAGAGGCTTTGAAATATATTACAAAAGCATATGAATTATGTAAATCTGAGTTAACTAAATATATATAT GTTGTAGATAAATATTGTTATATACTATATAGTTTAAAAAAATATGAACTACTAAGAGAAAAAGCTATAGAAGGAATTAA TAATTATAAAGATTTTTTAGATTTTTATTTTTATTTAGGAGAGGCGTGTTTTAATTTAAAACAGTATGATCAATCTATAG ATGCGTATTGTAATTATTTAAATATATATACAAAACTTCAAAAGAATGAAATAGAATTTACTAATATTTTATCAGAATCT ACTAGAGGATTTAAGGACAATATCTTATATAACTTAGCAATGGGTTATTATAATCTAAAAAAATACAACTGTGCTATTGA TGCTATAGAGAATATAAATGATAAAAACATTATAAAAGATAAAATTTATGGAGTATTTAAAATTATTGATAAAGGGGATT TATGGGGTAAATTATATATAATAGATGGAATTATTGATAAACATAATTTTGAAGATGCATTAGTATATGTACATGAGGAA CTATCATTAAACAAATTACAAAACATAGAAGTAGAACAATTAAAACAATTAAAAGTAATAATAAACATTGTTTCATATTT TAAAATTAATAACAATATAAATGAAGAAATTTTTAATGAAATAAAAGAAATTATATTAAGAAATAAAGTTCCGTATATAG TATTTGTATATTATACATTAAAATATAATATAAATGAAATTAAAAATTTTATATGTTTTGGAAAAGATAAAATTGAAAGT ATATTAATTCATTTATGTAAAAATTATTATGAGTTCAATGAAGTTTTATATAAAGGATTAAATGTTTTAAAATCAAGTAC TTTTTCAGATTTGCTAATGAGAACAACAGTATTAAAATCTTTTATCTTGGGAGGAAAGATTCCTAAGGAATTAAGAGAGA AAATATTCTTATCTTATATAGCAGAGAAATATTATACCATAATAAAATGTTATGATAATGAAATAATAAAGCATAACCTA TGGATACTTTCTTCAGAAGAGAGGTTTATTATACAGTTAAAAGAAACTTTAAGTTATAAATATAATGATACTTTGAAATG TATTCAATGTATGAAAAATCTTTTAAATTTAGATAATGGTTATATTGGTTATATCAAATTATTAGTCGGAAAATTTGAGG AGGTTACTATTAATAAGAAAGTCAAAGCATTTCTTCCTGAGCTTGTTCAAAATATACGAACTCTTATAAATAACAAGAAA TATCAAGATGCTTATAATACTATTGAAAAAGGTTTAGATTTAGTTTACTTTGACTTTGATTTAATGGTATTAAAATATAA TTTGCTTTTAAACTTTAATTATACAGAAGAAGCAATGGAATGCTTAAATAATATAATTCTATATGGAGATATAGATAGAG TAAATAATTTCATATATAATCATTAG
Upstream 100 bases:
>100_bases TGTGAATGAGGTAGTATTCAATAAAAAACTTATTCTTAAGTAATTTTTATAAAGTTCGATAAATAAAATAGGTGAATTTT ATATTTAGGAGCGAAAAATA
Downstream 100 bases:
>100_bases TTAAAGCGCTATATATAAAGTTAATTTTAGGAGTTTAATTATGAAGATAACATTATGTATGATAGTTAAAAATGAAGAAA AAAATATAAAAAGGTGTTTA
Product: glycosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 701; Mature: 701
Protein sequence:
>701_residues MKLSIAMIVKNEEKNLERTLIPLKKLKEYIDVEIVIVDTGSTDNTIKIAKKYTDKVYLHIWNNDFAAMRNISIDYCTGDW ILVLDADEALYDIKDLGELFNRNIIHKYNSAFIKIVNFNKNIENSINNENIAPLLRIFKRNTVKYEGIVHEQPDFKAPVL NTNIRFIHYGYDNDDYELMECKFKRNIELLFKQLRDNPEDIYVNFQIATSYAMHKDLKEALKYITKAYELCKSELTKYIY VVDKYCYILYSLKKYELLREKAIEGINNYKDFLDFYFYLGEACFNLKQYDQSIDAYCNYLNIYTKLQKNEIEFTNILSES TRGFKDNILYNLAMGYYNLKKYNCAIDAIENINDKNIIKDKIYGVFKIIDKGDLWGKLYIIDGIIDKHNFEDALVYVHEE LSLNKLQNIEVEQLKQLKVIINIVSYFKINNNINEEIFNEIKEIILRNKVPYIVFVYYTLKYNINEIKNFICFGKDKIES ILIHLCKNYYEFNEVLYKGLNVLKSSTFSDLLMRTTVLKSFILGGKIPKELREKIFLSYIAEKYYTIIKCYDNEIIKHNL WILSSEERFIIQLKETLSYKYNDTLKCIQCMKNLLNLDNGYIGYIKLLVGKFEEVTINKKVKAFLPELVQNIRTLINNKK YQDAYNTIEKGLDLVYFDFDLMVLKYNLLLNFNYTEEAMECLNNIILYGDIDRVNNFIYNH
Sequences:
>Translated_701_residues MKLSIAMIVKNEEKNLERTLIPLKKLKEYIDVEIVIVDTGSTDNTIKIAKKYTDKVYLHIWNNDFAAMRNISIDYCTGDW ILVLDADEALYDIKDLGELFNRNIIHKYNSAFIKIVNFNKNIENSINNENIAPLLRIFKRNTVKYEGIVHEQPDFKAPVL NTNIRFIHYGYDNDDYELMECKFKRNIELLFKQLRDNPEDIYVNFQIATSYAMHKDLKEALKYITKAYELCKSELTKYIY VVDKYCYILYSLKKYELLREKAIEGINNYKDFLDFYFYLGEACFNLKQYDQSIDAYCNYLNIYTKLQKNEIEFTNILSES TRGFKDNILYNLAMGYYNLKKYNCAIDAIENINDKNIIKDKIYGVFKIIDKGDLWGKLYIIDGIIDKHNFEDALVYVHEE LSLNKLQNIEVEQLKQLKVIINIVSYFKINNNINEEIFNEIKEIILRNKVPYIVFVYYTLKYNINEIKNFICFGKDKIES ILIHLCKNYYEFNEVLYKGLNVLKSSTFSDLLMRTTVLKSFILGGKIPKELREKIFLSYIAEKYYTIIKCYDNEIIKHNL WILSSEERFIIQLKETLSYKYNDTLKCIQCMKNLLNLDNGYIGYIKLLVGKFEEVTINKKVKAFLPELVQNIRTLINNKK YQDAYNTIEKGLDLVYFDFDLMVLKYNLLLNFNYTEEAMECLNNIILYGDIDRVNNFIYNH >Mature_701_residues MKLSIAMIVKNEEKNLERTLIPLKKLKEYIDVEIVIVDTGSTDNTIKIAKKYTDKVYLHIWNNDFAAMRNISIDYCTGDW ILVLDADEALYDIKDLGELFNRNIIHKYNSAFIKIVNFNKNIENSINNENIAPLLRIFKRNTVKYEGIVHEQPDFKAPVL NTNIRFIHYGYDNDDYELMECKFKRNIELLFKQLRDNPEDIYVNFQIATSYAMHKDLKEALKYITKAYELCKSELTKYIY VVDKYCYILYSLKKYELLREKAIEGINNYKDFLDFYFYLGEACFNLKQYDQSIDAYCNYLNIYTKLQKNEIEFTNILSES TRGFKDNILYNLAMGYYNLKKYNCAIDAIENINDKNIIKDKIYGVFKIIDKGDLWGKLYIIDGIIDKHNFEDALVYVHEE LSLNKLQNIEVEQLKQLKVIINIVSYFKINNNINEEIFNEIKEIILRNKVPYIVFVYYTLKYNINEIKNFICFGKDKIES ILIHLCKNYYEFNEVLYKGLNVLKSSTFSDLLMRTTVLKSFILGGKIPKELREKIFLSYIAEKYYTIIKCYDNEIIKHNL WILSSEERFIIQLKETLSYKYNDTLKCIQCMKNLLNLDNGYIGYIKLLVGKFEEVTINKKVKAFLPELVQNIRTLINNKK YQDAYNTIEKGLDLVYFDFDLMVLKYNLLLNFNYTEEAMECLNNIILYGDIDRVNNFIYNH
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 5 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00535 Glycos_transf_2; PF00515 TPR_1 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 83273; Mature: 83273
Theoretical pI: Translated: 6.83; Mature: 6.83
Prosite motif: PS00141 ASP_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLSIAMIVKNEEKNLERTLIPLKKLKEYIDVEIVIVDTGSTDNTIKIAKKYTDKVYLHI CCEEEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEECCCEEEEEE WNNDFAAMRNISIDYCTGDWILVLDADEALYDIKDLGELFNRNIIHKYNSAFIKIVNFNK ECCCHHHHHCCEEEEECCCEEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEEEECCC NIENSINNENIAPLLRIFKRNTVKYEGIVHEQPDFKAPVLNTNIRFIHYGYDNDDYELME CHHCCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCEECCCEEEEEECCCCCCHHHHH CKFKRNIELLFKQLRDNPEDIYVNFQIATSYAMHKDLKEALKYITKAYELCKSELTKYIY HHHHCCHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVDKYCYILYSLKKYELLREKAIEGINNYKDFLDFYFYLGEACFNLKQYDQSIDAYCNYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIYTKLQKNEIEFTNILSESTRGFKDNILYNLAMGYYNLKKYNCAIDAIENINDKNIIKD HHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCEEHHHHHHHHHHHHCCCCCCHHHH KIYGVFKIIDKGDLWGKLYIIDGIIDKHNFEDALVYVHEELSLNKLQNIEVEQLKQLKVI HHHHHHEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECHHCHHHHCCCCHHHHHHHHHH INIVSYFKINNNINEEIFNEIKEIILRNKVPYIVFVYYTLKYNINEIKNFICFGKDKIES HHHHHHHEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECHHHHHHHHHCCHHHHHH ILIHLCKNYYEFNEVLYKGLNVLKSSTFSDLLMRTTVLKSFILGGKIPKELREKIFLSYI HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH AEKYYTIIKCYDNEIIKHNLWILSSEERFIIQLKETLSYKYNDTLKCIQCMKNLLNLDNG HHHHHEEEEEECCCEEEEEEEEEECCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHCCCCC YIGYIKLLVGKFEEVTINKKVKAFLPELVQNIRTLINNKKYQDAYNTIEKGLDLVYFDFD HHHHHHHHHCCHHHEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEHH LMVLKYNLLLNFNYTEEAMECLNNIILYGDIDRVNNFIYNH EEEEEEEEEEECCCHHHHHHHHHCEEEEECHHHHHHHHCCC >Mature Secondary Structure MKLSIAMIVKNEEKNLERTLIPLKKLKEYIDVEIVIVDTGSTDNTIKIAKKYTDKVYLHI CCEEEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCEEEEEEECCCEEEEEE WNNDFAAMRNISIDYCTGDWILVLDADEALYDIKDLGELFNRNIIHKYNSAFIKIVNFNK ECCCHHHHHCCEEEEECCCEEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEEEECCC NIENSINNENIAPLLRIFKRNTVKYEGIVHEQPDFKAPVLNTNIRFIHYGYDNDDYELME CHHCCCCCCCHHHHHHHHHCCCEEECCEEECCCCCCCCEECCCEEEEEECCCCCCHHHHH CKFKRNIELLFKQLRDNPEDIYVNFQIATSYAMHKDLKEALKYITKAYELCKSELTKYIY HHHHCCHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VVDKYCYILYSLKKYELLREKAIEGINNYKDFLDFYFYLGEACFNLKQYDQSIDAYCNYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIYTKLQKNEIEFTNILSESTRGFKDNILYNLAMGYYNLKKYNCAIDAIENINDKNIIKD HHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHCCEEHHHHHHHHHHHHCCCCCCHHHH KIYGVFKIIDKGDLWGKLYIIDGIIDKHNFEDALVYVHEELSLNKLQNIEVEQLKQLKVI HHHHHHEEEECCCCCEEEEEEECCCCCCCCCCEEEEEECHHCHHHHCCCCHHHHHHHHHH INIVSYFKINNNINEEIFNEIKEIILRNKVPYIVFVYYTLKYNINEIKNFICFGKDKIES HHHHHHHEECCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECHHHHHHHHHCCHHHHHH ILIHLCKNYYEFNEVLYKGLNVLKSSTFSDLLMRTTVLKSFILGGKIPKELREKIFLSYI HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH AEKYYTIIKCYDNEIIKHNLWILSSEERFIIQLKETLSYKYNDTLKCIQCMKNLLNLDNG HHHHHEEEEEECCCEEEEEEEEEECCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHCCCCC YIGYIKLLVGKFEEVTINKKVKAFLPELVQNIRTLINNKKYQDAYNTIEKGLDLVYFDFD HHHHHHHHHCCHHHEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEHH LMVLKYNLLLNFNYTEEAMECLNNIILYGDIDRVNNFIYNH EEEEEEEEEEECCCHHHHHHHHHCEEEEECHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8123787 [H]