| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170756636
Identifier: 170756636
GI number: 170756636
Start: 2898931
End: 2900016
Strand: Reverse
Name: 170756636
Synonym: CLD_1845
Alternate gene names: NA
Gene position: 2900016-2898931 (Counterclockwise)
Preceding gene: 170757445
Following gene: 170756924
Centisome position: 73.27
GC content: 25.41
Gene sequence:
>1086_bases ATGAAGATAACATTATGTATGATAGTTAAAAATGAAGAAAAAAATATAAAAAGGTGTTTAGAAAGTGCATTAAAAATTGT AGATGACGCAATAATTGTAGATACTGGTTCTACAGATAGAACATTAGATATAATAAAAACTTTTGATAAAAAGATTCAAA TAATCAATTATAATTGGGAAGATGACTTTTCTAAAGCTAGAAATTTAAGTATAAAAAATGCAAATGGTGATTGGATCCTT GTACTTGATGCAGATGAAGAATTAATATGTGATAAGGAGAAACTGATATCAAAACTCAAAGATACTAATTTAAATTCATT TAATGTAACTTGGATAAATGTTCTTGATAATAAGGGAGAGTTAGATTCTTTTGCTTATAATAGAGTGTTCAGAAATAAGG GATATAGATATTATAGGGCCATACACGAACAACTTGATGTGAATGAAAAGGAAAGTGGAATATTAGAAGAAGAAATATTT AAAATAATACATTATGGTTATACAAAAGAAAGCATGGAAAAAAATAATAAAATAAGCAGAAACTTAAAAATATTGCTTGA TTGTTATAATAATGATTCAGAAGATCCCTTTGTTTGTTATCATCTTGGTGCTACTTATGCATCTTCTAGAGATTATAAAA ATGCTTTAAATTATTTTGTTAGAAGCTATGAATTAGGGCTTAATAAAGGTTTTGGGGCATATTATTATGAACTCATAAAA AGAATGAGTGAATGTATTTATTTATTACATGATTATAAACTTTGCATAGATTTAATAACAGAACTTTTAAGTAAAGAAGA TGTTAGAAATTTTACTGATCTTTATTATATTGTTGGAAGCTGTTTTTATAAGATGAAAGATCATGAAAATGCAAAAAAAA TGTTCAATAAATGTATTGAATTAGGAGAAAGGCAAGATTTCCCTACTTTCGCGGGAAGAGGAAGTTTTCTTTCAGAATTA ATGCTTGCTAGAATATATGTTGATAAAAATGATTATAAAAATGCAAAAATGTTTTACTTAAAGGTGTTACAATCTAAGGA GCGTTTGTCTAAAGATATTATTGAAGAAATATATTGTTATATATAA
Upstream 100 bases:
>100_bases AATAATATAATTCTATATGGAGATATAGATAGAGTAAATAATTTCATATATAATCATTAGTTAAAGCGCTATATATAAAG TTAATTTTAGGAGTTTAATT
Downstream 100 bases:
>100_bases TTAAATGGAAATAACAATATATTTAAAAGATATTATTTATAAAAGATACAATCAACGAATAATTTGCAAAAATTTGGAGG TTTATTATGGAAAAATCATT
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 361; Mature: 361
Protein sequence:
>361_residues MKITLCMIVKNEEKNIKRCLESALKIVDDAIIVDTGSTDRTLDIIKTFDKKIQIINYNWEDDFSKARNLSIKNANGDWIL VLDADEELICDKEKLISKLKDTNLNSFNVTWINVLDNKGELDSFAYNRVFRNKGYRYYRAIHEQLDVNEKESGILEEEIF KIIHYGYTKESMEKNNKISRNLKILLDCYNNDSEDPFVCYHLGATYASSRDYKNALNYFVRSYELGLNKGFGAYYYELIK RMSECIYLLHDYKLCIDLITELLSKEDVRNFTDLYYIVGSCFYKMKDHENAKKMFNKCIELGERQDFPTFAGRGSFLSEL MLARIYVDKNDYKNAKMFYLKVLQSKERLSKDIIEEIYCYI
Sequences:
>Translated_361_residues MKITLCMIVKNEEKNIKRCLESALKIVDDAIIVDTGSTDRTLDIIKTFDKKIQIINYNWEDDFSKARNLSIKNANGDWIL VLDADEELICDKEKLISKLKDTNLNSFNVTWINVLDNKGELDSFAYNRVFRNKGYRYYRAIHEQLDVNEKESGILEEEIF KIIHYGYTKESMEKNNKISRNLKILLDCYNNDSEDPFVCYHLGATYASSRDYKNALNYFVRSYELGLNKGFGAYYYELIK RMSECIYLLHDYKLCIDLITELLSKEDVRNFTDLYYIVGSCFYKMKDHENAKKMFNKCIELGERQDFPTFAGRGSFLSEL MLARIYVDKNDYKNAKMFYLKVLQSKERLSKDIIEEIYCYI >Mature_361_residues MKITLCMIVKNEEKNIKRCLESALKIVDDAIIVDTGSTDRTLDIIKTFDKKIQIINYNWEDDFSKARNLSIKNANGDWIL VLDADEELICDKEKLISKLKDTNLNSFNVTWINVLDNKGELDSFAYNRVFRNKGYRYYRAIHEQLDVNEKESGILEEEIF KIIHYGYTKESMEKNNKISRNLKILLDCYNNDSEDPFVCYHLGATYASSRDYKNALNYFVRSYELGLNKGFGAYYYELIK RMSECIYLLHDYKLCIDLITELLSKEDVRNFTDLYYIVGSCFYKMKDHENAKKMFNKCIELGERQDFPTFAGRGSFLSEL MLARIYVDKNDYKNAKMFYLKVLQSKERLSKDIIEEIYCYI
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 5 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00535 Glycos_transf_2; PF00515 TPR_1 [H]
EC number: NA
Molecular weight: Translated: 42623; Mature: 42623
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKITLCMIVKNEEKNIKRCLESALKIVDDAIIVDTGSTDRTLDIIKTFDKKIQIINYNWE CEEEEEEEEECCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCEEEEEEECCC DDFSKARNLSIKNANGDWILVLDADEELICDKEKLISKLKDTNLNSFNVTWINVLDNKGE HHHHHHHCCEEEECCCCEEEEEECCCHHHCCHHHHHHHHHCCCCCEEEEEEEEEECCCCC LDSFAYNRVFRNKGYRYYRAIHEQLDVNEKESGILEEEIFKIIHYGYTKESMEKNNKISR HHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCCCHHHHHHCCHHHC NLKILLDCYNNDSEDPFVCYHLGATYASSRDYKNALNYFVRSYELGLNKGFGAYYYELIK CEEEEEEECCCCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH RMSECIYLLHDYKLCIDLITELLSKEDVRNFTDLYYIVGSCFYKMKDHENAKKMFNKCIE HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LGERQDFPTFAGRGSFLSELMLARIYVDKNDYKNAKMFYLKVLQSKERLSKDIIEEIYCY HCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC I C >Mature Secondary Structure MKITLCMIVKNEEKNIKRCLESALKIVDDAIIVDTGSTDRTLDIIKTFDKKIQIINYNWE CEEEEEEEEECCHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCEEEEEEECCC DDFSKARNLSIKNANGDWILVLDADEELICDKEKLISKLKDTNLNSFNVTWINVLDNKGE HHHHHHHCCEEEECCCCEEEEEECCCHHHCCHHHHHHHHHCCCCCEEEEEEEEEECCCCC LDSFAYNRVFRNKGYRYYRAIHEQLDVNEKESGILEEEIFKIIHYGYTKESMEKNNKISR HHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHCCCCHHHHHHCCHHHC NLKILLDCYNNDSEDPFVCYHLGATYASSRDYKNALNYFVRSYELGLNKGFGAYYYELIK CEEEEEEECCCCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH RMSECIYLLHDYKLCIDLITELLSKEDVRNFTDLYYIVGSCFYKMKDHENAKKMFNKCIE HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH LGERQDFPTFAGRGSFLSELMLARIYVDKNDYKNAKMFYLKVLQSKERLSKDIIEEIYCY HCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC I C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8123787 [H]