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The map label for this gene is ydcM [C]

Identifier: 170757103

GI number: 170757103

Start: 2275159

End: 2276286

Strand: Reverse

Name: ydcM [C]

Synonym: CLD_2501

Alternate gene names: 170757103

Gene position: 2276286-2275159 (Counterclockwise)

Preceding gene: 170756758

Following gene: 170754214

Centisome position: 57.51

GC content: 25.35

Gene sequence:

>1128_bases
ATGATTAAAGCATTAAATATAAGATTATATCCAACAGAAGATCAAGTACACTTAATGTATAAACATATTGGCTGTATGAG
ATTTGTTTATAATTGGGCATTAGCAAGGCAAATAGAAAATTATAAAGGTAACAATAAGAAACTATCAGTTTCAGAATTAG
GTAAGGAATTAACTCTTTTAAAGAATACCGAAGGTTATGAGTGGCTTTATGAAGTATCTAATGCAACTTTAAAAGAAAGC
ATTAGAGATTTAGATAAAGCATATAAAAGTTTCTTTAATGGGAGTGGTTTTCCCAAATTTAAAAGTAAGAAAAAATCAAA
ACCTAAATTTTATAGTAGGTATGATAAAGTTTATTTCAAAGAAGATTTTGTGAATCTTGAAAAGATAGGTAAAGTTAAAT
GTAGAGTAGATTATGATATGGATTTAACTACTATAAAAAAGTTTAGTAACCCTAGGATATATTTTAATAGCAGAGTATGG
GTACTTTTAGTTGGAATTGAAACACCAGTAGAAAAAACTAAATTAAATGATTTTAGTTTAGGAATAGATTTAGGGATAAT
GCAATTAGCAATAACTAATATAGACGATTTATATGTTAAAAATATTAATAAAACTTATACGGTTAAAAAATTAAATAAAA
AATTAAAAAGATTACAAAGACAATGTTCAAGAAAATATGAAGAAAATAGAAAAGGAGGAGGTTACCAGAAAACTAAGAAC
ATTGCAAAACTTGAAAAGAAGATTAAAAAACTTCATAGTAGAATTAAAAATATTAGATTAAATCATATCCATCAAAGCAC
TTCTAAAATGGTGAAAACCAAGCCTTTTAGAGTAGTAATGGAAGATTTAAAAGTATCTAATATGATGCAAAATAGGCACT
TATCAAAGGCAATAGCAGAGCAAGGATTTGATATATTTATAAATAAAATGAAATATAAATGTCAGCAGTACGGTATTGAA
TTTATTCAAGTACCTACATTTTATCCATCAAGTAAAACATGTAGTAATTGTGGATGTATTAAAAAAGATTTAAAAATTTC
AGATAGAATTTATAAATGTTCTTGTGGCTTTATATGTGATAGGGATAAAAATGCTAGTTATAATCTTGCAAACTATGGTT
TAGTATAA

Upstream 100 bases:

>100_bases
TAAGCTTCTATTAGCTGTTTTATCACCTTAAATCTATTATATAAAGATGATCTTTGGATACAATAATGTAATAGATATTA
AAAGTGAGGTGATAAACACA

Downstream 100 bases:

>100_bases
TCAACTAAAAGATTAACTAAACTGGGTAATCGTTACAACCCACTACCCTTAACAGGTAGCAAAGCCTATGGAGTGTTATA
TCAAACGAAAGTAGCTTAGG

Product: transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MIKALNIRLYPTEDQVHLMYKHIGCMRFVYNWALARQIENYKGNNKKLSVSELGKELTLLKNTEGYEWLYEVSNATLKES
IRDLDKAYKSFFNGSGFPKFKSKKKSKPKFYSRYDKVYFKEDFVNLEKIGKVKCRVDYDMDLTTIKKFSNPRIYFNSRVW
VLLVGIETPVEKTKLNDFSLGIDLGIMQLAITNIDDLYVKNINKTYTVKKLNKKLKRLQRQCSRKYEENRKGGGYQKTKN
IAKLEKKIKKLHSRIKNIRLNHIHQSTSKMVKTKPFRVVMEDLKVSNMMQNRHLSKAIAEQGFDIFINKMKYKCQQYGIE
FIQVPTFYPSSKTCSNCGCIKKDLKISDRIYKCSCGFICDRDKNASYNLANYGLV

Sequences:

>Translated_375_residues
MIKALNIRLYPTEDQVHLMYKHIGCMRFVYNWALARQIENYKGNNKKLSVSELGKELTLLKNTEGYEWLYEVSNATLKES
IRDLDKAYKSFFNGSGFPKFKSKKKSKPKFYSRYDKVYFKEDFVNLEKIGKVKCRVDYDMDLTTIKKFSNPRIYFNSRVW
VLLVGIETPVEKTKLNDFSLGIDLGIMQLAITNIDDLYVKNINKTYTVKKLNKKLKRLQRQCSRKYEENRKGGGYQKTKN
IAKLEKKIKKLHSRIKNIRLNHIHQSTSKMVKTKPFRVVMEDLKVSNMMQNRHLSKAIAEQGFDIFINKMKYKCQQYGIE
FIQVPTFYPSSKTCSNCGCIKKDLKISDRIYKCSCGFICDRDKNASYNLANYGLV
>Mature_375_residues
MIKALNIRLYPTEDQVHLMYKHIGCMRFVYNWALARQIENYKGNNKKLSVSELGKELTLLKNTEGYEWLYEVSNATLKES
IRDLDKAYKSFFNGSGFPKFKSKKKSKPKFYSRYDKVYFKEDFVNLEKIGKVKCRVDYDMDLTTIKKFSNPRIYFNSRVW
VLLVGIETPVEKTKLNDFSLGIDLGIMQLAITNIDDLYVKNINKTYTVKKLNKKLKRLQRQCSRKYEENRKGGGYQKTKN
IAKLEKKIKKLHSRIKNIRLNHIHQSTSKMVKTKPFRVVMEDLKVSNMMQNRHLSKAIAEQGFDIFINKMKYKCQQYGIE
FIQVPTFYPSSKTCSNCGCIKKDLKISDRIYKCSCGFICDRDKNASYNLANYGLV

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=373, Percent_Identity=30.0268096514745, Blast_Score=147, Evalue=8e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44032; Mature: 44032

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKALNIRLYPTEDQVHLMYKHIGCMRFVYNWALARQIENYKGNNKKLSVSELGKELTLL
CCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCCEEEE
KNTEGYEWLYEVSNATLKESIRDLDKAYKSFFNGSGFPKFKSKKKSKPKFYSRYDKVYFK
ECCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHH
EDFVNLEKIGKVKCRVDYDMDLTTIKKFSNPRIYFNSRVWVLLVGIETPVEKTKLNDFSL
HHHHCHHHHCCEEEEEECCCCHHHHHHCCCCEEEECCEEEEEEEECCCCHHHHCCCCEEC
GIDLGIMQLAITNIDDLYVKNINKTYTVKKLNKKLKRLQRQCSRKYEENRKGGGYQKTKN
CHHHHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
IAKLEKKIKKLHSRIKNIRLNHIHQSTSKMVKTKPFRVVMEDLKVSNMMQNRHLSKAIAE
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QGFDIFINKMKYKCQQYGIEFIQVPTFYPSSKTCSNCGCIKKDLKISDRIYKCSCGFICD
CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHCCCCCCCEEEEECCEEEC
RDKNASYNLANYGLV
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MIKALNIRLYPTEDQVHLMYKHIGCMRFVYNWALARQIENYKGNNKKLSVSELGKELTLL
CCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCCEEEE
KNTEGYEWLYEVSNATLKESIRDLDKAYKSFFNGSGFPKFKSKKKSKPKFYSRYDKVYFK
ECCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHHHHH
EDFVNLEKIGKVKCRVDYDMDLTTIKKFSNPRIYFNSRVWVLLVGIETPVEKTKLNDFSL
HHHHCHHHHCCEEEEEECCCCHHHHHHCCCCEEEECCEEEEEEEECCCCHHHHCCCCEEC
GIDLGIMQLAITNIDDLYVKNINKTYTVKKLNKKLKRLQRQCSRKYEENRKGGGYQKTKN
CHHHHHHHHHHCCCHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
IAKLEKKIKKLHSRIKNIRLNHIHQSTSKMVKTKPFRVVMEDLKVSNMMQNRHLSKAIAE
HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QGFDIFINKMKYKCQQYGIEFIQVPTFYPSSKTCSNCGCIKKDLKISDRIYKCSCGFICD
CCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHCCCCCCCEEEEECCEEEC
RDKNASYNLANYGLV
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]