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The map label for this gene is ybhR [H]

Identifier: 170757027

GI number: 170757027

Start: 769922

End: 770968

Strand: Direct

Name: ybhR [H]

Synonym: CLD_0112

Alternate gene names: 170757027

Gene position: 769922-770968 (Clockwise)

Preceding gene: 170755353

Following gene: 170756216

Centisome position: 19.45

GC content: 25.98

Gene sequence:

>1047_bases
ATGAGGATACGTGCATTAATAAAAAGGATAAGTTTACAAATGCTTAGGGATAAAAGAACTTTAGCGTTACTATTTGTTGC
TCCTTTACTTATACTAACACTAATGTATTTTTTATTTAATGGTAGTACAGTTAATCCTAAATTAGGTGTAGTTGATTTGA
ACAAAGATATAATAGAGGCATTAAAAAGTGGAGATATAAATGTAATAGAATATGAAACTGCTTCTAATGAAGTTATTATC
AAAGATAAGCTTGATGGTTTATTAGAAATGAATAATAAAACTTTAAAATTGACTCTTGAAAATAGTGATCCTTCTAAAGC
TAAGCTTCTTAAAATGAAGATAAATCAAGCTATAGCTTCTCAATCTAGAATAGCTAATATTACTTTGCCAGTTAAATTTA
AGACACCAACTATTGATACAAATTATATTTATGGAAATAGTGAAACTACATTTTTTGATGTATTAAGTCCTATCTTAATT
GGATTTTTTGTATTCTTTTTTGTTTTTTTAATATCTGGAATTGGTCTTTTGCGTGAGAGGACTACTGGAACCTTAGAACG
TTTAATGGCCACACCTATAAAAAGATACGAAGTAGTAATAGGATATTTAGTAGGTTATGGTATTTTTGCAGTTATTCAAA
CATTAATTGTAGTTTTATTTTCAATAAATATTTTACATATTATACTTGCTGGATCTATTTTAAATGTGATATTAATTAAT
TTACTTTTAGCTTTAGTAGCTTTATCTTTAGGAATTTTGTTATCAACTTTTGCTTCTTCTGAGTTTCAAATGATCCAATT
TATACCTTTAGTAATAATTCCACAAATATTTTTTGCAGGGATTTTTCCACTTGAAGGTATGTCTAATTGGTTGCAGACAA
TTGGGAAAATCATGCCTATTTATTATGGAGCAGATGCACTAAAAAGTGTAATGTATAAAGGATATAATTTAAATCAAATA
ACTAACGATTTATTATTTTTAGCTATATTTGCAAGCATATTTATTATTCTAAATATAGTTGCTTTAAAAAAATATCGTAG
ATTATAA

Upstream 100 bases:

>100_bases
ATGGTGTTATATTGGCAGATGGTACTCCATCCGAGTTGATGGAATATTACAAAGCTAATGATTTAGATGAAGTATTTTTA
AAAGCAGGGAGAAAAAAGAT

Downstream 100 bases:

>100_bases
TTGAACATACTATAACACCCCTGATTAATTTAATCAGGGGTGTTTATGATTTATAACATGTAAACTTCTAATATTTCTTA
CATATTATATAGTGAGAAAG

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 348

Protein sequence:

>348_residues
MRIRALIKRISLQMLRDKRTLALLFVAPLLILTLMYFLFNGSTVNPKLGVVDLNKDIIEALKSGDINVIEYETASNEVII
KDKLDGLLEMNNKTLKLTLENSDPSKAKLLKMKINQAIASQSRIANITLPVKFKTPTIDTNYIYGNSETTFFDVLSPILI
GFFVFFFVFLISGIGLLRERTTGTLERLMATPIKRYEVVIGYLVGYGIFAVIQTLIVVLFSINILHIILAGSILNVILIN
LLLALVALSLGILLSTFASSEFQMIQFIPLVIIPQIFFAGIFPLEGMSNWLQTIGKIMPIYYGADALKSVMYKGYNLNQI
TNDLLFLAIFASIFIILNIVALKKYRRL

Sequences:

>Translated_348_residues
MRIRALIKRISLQMLRDKRTLALLFVAPLLILTLMYFLFNGSTVNPKLGVVDLNKDIIEALKSGDINVIEYETASNEVII
KDKLDGLLEMNNKTLKLTLENSDPSKAKLLKMKINQAIASQSRIANITLPVKFKTPTIDTNYIYGNSETTFFDVLSPILI
GFFVFFFVFLISGIGLLRERTTGTLERLMATPIKRYEVVIGYLVGYGIFAVIQTLIVVLFSINILHIILAGSILNVILIN
LLLALVALSLGILLSTFASSEFQMIQFIPLVIIPQIFFAGIFPLEGMSNWLQTIGKIMPIYYGADALKSVMYKGYNLNQI
TNDLLFLAIFASIFIILNIVALKKYRRL
>Mature_348_residues
MRIRALIKRISLQMLRDKRTLALLFVAPLLILTLMYFLFNGSTVNPKLGVVDLNKDIIEALKSGDINVIEYETASNEVII
KDKLDGLLEMNNKTLKLTLENSDPSKAKLLKMKINQAIASQSRIANITLPVKFKTPTIDTNYIYGNSETTFFDVLSPILI
GFFVFFFVFLISGIGLLRERTTGTLERLMATPIKRYEVVIGYLVGYGIFAVIQTLIVVLFSINILHIILAGSILNVILIN
LLLALVALSLGILLSTFASSEFQMIQFIPLVIIPQIFFAGIFPLEGMSNWLQTIGKIMPIYYGADALKSVMYKGYNLNQI
TNDLLFLAIFASIFIILNIVALKKYRRL

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=185, Percent_Identity=28.6486486486486, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787011, Length=389, Percent_Identity=22.3650385604113, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24650855, Length=276, Percent_Identity=22.463768115942, Blast_Score=85, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24650853, Length=276, Percent_Identity=22.463768115942, Blast_Score=85, Evalue=9e-17,
Organism=Drosophila melanogaster, GI85725262, Length=222, Percent_Identity=25.2252252252252, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI85725260, Length=222, Percent_Identity=25.2252252252252, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24582014, Length=267, Percent_Identity=20.5992509363296, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24582012, Length=267, Percent_Identity=20.5992509363296, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 39073; Mature: 39073

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIRALIKRISLQMLRDKRTLALLFVAPLLILTLMYFLFNGSTVNPKLGVVDLNKDIIEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHH
LKSGDINVIEYETASNEVIIKDKLDGLLEMNNKTLKLTLENSDPSKAKLLKMKINQAIAS
HHCCCCEEEEEECCCCCEEEHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
QSRIANITLPVKFKTPTIDTNYIYGNSETTFFDVLSPILIGFFVFFFVFLISGIGLLRER
HHHEEEEEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTGTLERLMATPIKRYEVVIGYLVGYGIFAVIQTLIVVLFSINILHIILAGSILNVILIN
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLALVALSLGILLSTFASSEFQMIQFIPLVIIPQIFFAGIFPLEGMSNWLQTIGKIMPI
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
YYGADALKSVMYKGYNLNQITNDLLFLAIFASIFIILNIVALKKYRRL
HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRIRALIKRISLQMLRDKRTLALLFVAPLLILTLMYFLFNGSTVNPKLGVVDLNKDIIEA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHH
LKSGDINVIEYETASNEVIIKDKLDGLLEMNNKTLKLTLENSDPSKAKLLKMKINQAIAS
HHCCCCEEEEEECCCCCEEEHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH
QSRIANITLPVKFKTPTIDTNYIYGNSETTFFDVLSPILIGFFVFFFVFLISGIGLLRER
HHHEEEEEEEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTGTLERLMATPIKRYEVVIGYLVGYGIFAVIQTLIVVLFSINILHIILAGSILNVILIN
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLALVALSLGILLSTFASSEFQMIQFIPLVIIPQIFFAGIFPLEGMSNWLQTIGKIMPI
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
YYGADALKSVMYKGYNLNQITNDLLFLAIFASIFIILNIVALKKYRRL
HCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]