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The map label for this gene is patM [H]

Identifier: 170756986

GI number: 170756986

Start: 1305741

End: 1306409

Strand: Direct

Name: patM [H]

Synonym: CLD_3389

Alternate gene names: 170756986

Gene position: 1305741-1306409 (Clockwise)

Preceding gene: 170754625

Following gene: 170756679

Centisome position: 32.99

GC content: 30.34

Gene sequence:

>669_bases
GTGGAAATTTTTGATGCAAAATATTTAGTACAATCATTAATAGTTCTTTTAAAGTATGCTCACATAACTTTGTCTATAGC
CATTTTATCCATGATTATAGCTGTTTTATTTGGGGTTATATTGGCAGTAATAAGAATGTATAAAGTTAAAGTTTTGCATA
GCATAAGTGAAATTTATATATCTTTCTTTAGAGGAACACCTATTTTAATACAGCTTTTTCTGTTCTACTATGGTCTGCCT
CAAATTATTCCGGCTTTTAAAGAAATCCCAGCATATATGGCAGTAGTTATTGCTTTGAGTATGAATGGCTCAGCATATAT
GGCAGAAATAATAAGAGGTGCAATAATGTCTATAGATAAAGGACAGATGGAGGCTTCATTGTCTTTAGGTATGACTGAAT
TCCAAGCTATGAAAAGAATAATTTTACCTCAAGCTGCTAGAGTTGCAATACCTTCTTTAGGCAATAGTTTTATTGATCTT
TTAAAAAGCTCATCTTTAGCATTTACTGTAGGGGTTGCAGAAATACTATCTAAGGCACAGATGAATGCAGCATCTAGTTA
TAGATTTTTTGAAAGTTATTTAGCAGTAGCTTTAATATATTGGGTAATGGTGGAGTTATTTAATTTTATGCAAAAATTAT
TAGAAAGAAAAATAGGAAAAGCTTATTAA

Upstream 100 bases:

>100_bases
TAGTATTACTTCCAGATACAGGACAAAGATATTTATCTACAGGAGTATTTGAGTAATAGAAAAATAATTAATGAGGAAAC
CATAGATAGGAGGAAAAATT

Downstream 100 bases:

>100_bases
AATTTAATATTAATAGTATTAGGAGGATATAGAATTGAATATAAAAAAGTTTAAAAAAATATTTTTAAGTATGTCATTAG
TTGTAGCTTTAGGAGTAGCA

Product: His/Glu/Gln/Arg/opine ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MEIFDAKYLVQSLIVLLKYAHITLSIAILSMIIAVLFGVILAVIRMYKVKVLHSISEIYISFFRGTPILIQLFLFYYGLP
QIIPAFKEIPAYMAVVIALSMNGSAYMAEIIRGAIMSIDKGQMEASLSLGMTEFQAMKRIILPQAARVAIPSLGNSFIDL
LKSSSLAFTVGVAEILSKAQMNAASSYRFFESYLAVALIYWVMVELFNFMQKLLERKIGKAY

Sequences:

>Translated_222_residues
MEIFDAKYLVQSLIVLLKYAHITLSIAILSMIIAVLFGVILAVIRMYKVKVLHSISEIYISFFRGTPILIQLFLFYYGLP
QIIPAFKEIPAYMAVVIALSMNGSAYMAEIIRGAIMSIDKGQMEASLSLGMTEFQAMKRIILPQAARVAIPSLGNSFIDL
LKSSSLAFTVGVAEILSKAQMNAASSYRFFESYLAVALIYWVMVELFNFMQKLLERKIGKAY
>Mature_222_residues
MEIFDAKYLVQSLIVLLKYAHITLSIAILSMIIAVLFGVILAVIRMYKVKVLHSISEIYISFFRGTPILIQLFLFYYGLP
QIIPAFKEIPAYMAVVIALSMNGSAYMAEIIRGAIMSIDKGQMEASLSLGMTEFQAMKRIILPQAARVAIPSLGNSFIDL
LKSSSLAFTVGVAEILSKAQMNAASSYRFFESYLAVALIYWVMVELFNFMQKLLERKIGKAY

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=214, Percent_Identity=45.7943925233645, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1787030, Length=217, Percent_Identity=33.1797235023041, Blast_Score=134, Evalue=7e-33,
Organism=Escherichia coli, GI1787086, Length=210, Percent_Identity=33.8095238095238, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1786874, Length=208, Percent_Identity=28.3653846153846, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788645, Length=202, Percent_Identity=33.6633663366337, Blast_Score=107, Evalue=4e-25,
Organism=Escherichia coli, GI1788646, Length=211, Percent_Identity=31.2796208530806, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1786873, Length=186, Percent_Identity=36.0215053763441, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=30.7317073170732, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787087, Length=219, Percent_Identity=25.1141552511416, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI48994930, Length=170, Percent_Identity=32.9411764705882, Blast_Score=80, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24852; Mature: 24852

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIFDAKYLVQSLIVLLKYAHITLSIAILSMIIAVLFGVILAVIRMYKVKVLHSISEIYI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFFRGTPILIQLFLFYYGLPQIIPAFKEIPAYMAVVIALSMNGSAYMAEIIRGAIMSIDK
HHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH
GQMEASLSLGMTEFQAMKRIILPQAARVAIPSLGNSFIDLLKSSSLAFTVGVAEILSKAQ
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
MNAASSYRFFESYLAVALIYWVMVELFNFMQKLLERKIGKAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEIFDAKYLVQSLIVLLKYAHITLSIAILSMIIAVLFGVILAVIRMYKVKVLHSISEIYI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SFFRGTPILIQLFLFYYGLPQIIPAFKEIPAYMAVVIALSMNGSAYMAEIIRGAIMSIDK
HHHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCH
GQMEASLSLGMTEFQAMKRIILPQAARVAIPSLGNSFIDLLKSSSLAFTVGVAEILSKAQ
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
MNAASSYRFFESYLAVALIYWVMVELFNFMQKLLERKIGKAY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA