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The map label for this gene is patH [H]

Identifier: 170756679

GI number: 170756679

Start: 1306444

End: 1307268

Strand: Direct

Name: patH [H]

Synonym: CLD_3388

Alternate gene names: 170756679

Gene position: 1306444-1307268 (Clockwise)

Preceding gene: 170756986

Following gene: 170755427

Centisome position: 33.01

GC content: 27.03

Gene sequence:

>825_bases
TTGAATATAAAAAAGTTTAAAAAAATATTTTTAAGTATGTCATTAGTTGTAGCTTTAGGAGTAGCATTAACAGCATGTGC
TCAGAAGAATAAAGAAATAAAGGAAAATAAAAATACAATAAAAATAGGAACTTCAGGACAGTACTATCCTTTTACTTTTA
TAGATAAAGATAGTAATAAAGTCCAAGGATTTGAAATAGATATTTGGGAAGAAATAGGTAAAAGAACAGGTTATAAACCA
GAATTTAAGGTAGCAGATTGGACAGGCATTATGGGAATGCTAGATACAGGTAAAATAGATACTGTAGCCAATGAAATAAC
TGTAACAGATAAGAAAAAAGAAAAATATTATTTTTCAAAACCTTATGTTTATTCAGGAGTACAGTTAGCTACTAAAAAAG
GAAATAATAATATAAAATCTTTAAAGGATTTAGAGGGCAAAACTGTAGCTACTCAGGTAGGAACTAATTATTCTAAATCT
ATAGAAGATTATAATAATAAGAATAAAGGGGAAGATATAAAAACAAAACAATATAATAGTTTTTCAGGTATGTTCCAAGA
TGTAGATTTGGGTAGAGTTGATGCTTTAATAGAGGATAAATTAGCCTGCCTTGTAAATATAAAAAAATCAGGATTAAATT
TACAGTTAGCCGGTGAACCTATAGAAGAGATGGAAAATGCATATCCTTTTGTAAAGAAGGATGAAAATAAAGAAAAAATA
GAAAAAATAAATAAAGCTTTAGATGATATGAAAAAGGACGGAACCCTGCAAAATATATCTAAAAAATGGTTTGGAGAAAA
TGTTACAGAAAAAAGTAAAAAATAA

Upstream 100 bases:

>100_bases
GTAATGGTGGAGTTATTTAATTTTATGCAAAAATTATTAGAAAGAAAAATAGGAAAAGCTTATTAAAATTTAATATTAAT
AGTATTAGGAGGATATAGAA

Downstream 100 bases:

>100_bases
ATTATTTATTTGATTAAAGTTAAATATTTTTATATAAAGCTTTAAAGATATTAATATAAAATCTATAGTTACAAATAATA
AAATAAAAAACAGTGGTGAT

Product: polar amino acid ABC transporter amino acid-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 274

Protein sequence:

>274_residues
MNIKKFKKIFLSMSLVVALGVALTACAQKNKEIKENKNTIKIGTSGQYYPFTFIDKDSNKVQGFEIDIWEEIGKRTGYKP
EFKVADWTGIMGMLDTGKIDTVANEITVTDKKKEKYYFSKPYVYSGVQLATKKGNNNIKSLKDLEGKTVATQVGTNYSKS
IEDYNNKNKGEDIKTKQYNSFSGMFQDVDLGRVDALIEDKLACLVNIKKSGLNLQLAGEPIEEMENAYPFVKKDENKEKI
EKINKALDDMKKDGTLQNISKKWFGENVTEKSKK

Sequences:

>Translated_274_residues
MNIKKFKKIFLSMSLVVALGVALTACAQKNKEIKENKNTIKIGTSGQYYPFTFIDKDSNKVQGFEIDIWEEIGKRTGYKP
EFKVADWTGIMGMLDTGKIDTVANEITVTDKKKEKYYFSKPYVYSGVQLATKKGNNNIKSLKDLEGKTVATQVGTNYSKS
IEDYNNKNKGEDIKTKQYNSFSGMFQDVDLGRVDALIEDKLACLVNIKKSGLNLQLAGEPIEEMENAYPFVKKDENKEKI
EKINKALDDMKKDGTLQNISKKWFGENVTEKSKK
>Mature_274_residues
MNIKKFKKIFLSMSLVVALGVALTACAQKNKEIKENKNTIKIGTSGQYYPFTFIDKDSNKVQGFEIDIWEEIGKRTGYKP
EFKVADWTGIMGMLDTGKIDTVANEITVTDKKKEKYYFSKPYVYSGVQLATKKGNNNIKSLKDLEGKTVATQVGTNYSKS
IEDYNNKNKGEDIKTKQYNSFSGMFQDVDLGRVDALIEDKLACLVNIKKSGLNLQLAGEPIEEMENAYPFVKKDENKEKI
EKINKALDDMKKDGTLQNISKKWFGENVTEKSKK

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid [H]

COG id: COG0834

COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788228, Length=261, Percent_Identity=36.7816091954023, Blast_Score=171, Evalue=6e-44,
Organism=Escherichia coli, GI1787031, Length=263, Percent_Identity=32.319391634981, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788649, Length=271, Percent_Identity=28.0442804428044, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787085, Length=230, Percent_Identity=28.2608695652174, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1787088, Length=255, Percent_Identity=26.6666666666667, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788648, Length=233, Percent_Identity=25.3218884120172, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: 1920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1060 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001638
- InterPro:   IPR018313 [H]

Pfam domain/function: PF00497 SBP_bac_3 [H]

EC number: NA

Molecular weight: Translated: 31031; Mature: 31031

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01034 GLYCOSYL_HYDROL_F16

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKKFKKIFLSMSLVVALGVALTACAQKNKEIKENKNTIKIGTSGQYYPFTFIDKDSNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEECCCCCEEEEEEEECCCCC
VQGFEIDIWEEIGKRTGYKPEFKVADWTGIMGMLDTGKIDTVANEITVTDKKKEKYYFSK
CCCEEEHHHHHHHHHCCCCCCEEECCHHHHHHCCCCCCHHHHHCEEEECCCCCCCEEECC
PYVYSGVQLATKKGNNNIKSLKDLEGKTVATQVGTNYSKSIEDYNNKNKGEDIKTKQYNS
CEEECCEEEEEECCCCCHHHHHHCCCCEEEEHHCCCHHHHHHHHCCCCCCCCCCCCCCCC
FSGMFQDVDLGRVDALIEDKLACLVNIKKSGLNLQLAGEPIEEMENAYPFVKKDENKEKI
HHCCHHCCCCHHHHHHHHHHHHHEEEECCCCCEEEECCCCHHHHHHCCCCCCCCCCHHHH
EKINKALDDMKKDGTLQNISKKWFGENVTEKSKK
HHHHHHHHHHHCCCCHHHHHHHHCCCCCHHCCCC
>Mature Secondary Structure
MNIKKFKKIFLSMSLVVALGVALTACAQKNKEIKENKNTIKIGTSGQYYPFTFIDKDSNK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEECCCCCEEEEEEEECCCCC
VQGFEIDIWEEIGKRTGYKPEFKVADWTGIMGMLDTGKIDTVANEITVTDKKKEKYYFSK
CCCEEEHHHHHHHHHCCCCCCEEECCHHHHHHCCCCCCHHHHHCEEEECCCCCCCEEECC
PYVYSGVQLATKKGNNNIKSLKDLEGKTVATQVGTNYSKSIEDYNNKNKGEDIKTKQYNS
CEEECCEEEEEECCCCCHHHHHHCCCCEEEEHHCCCHHHHHHHHCCCCCCCCCCCCCCCC
FSGMFQDVDLGRVDALIEDKLACLVNIKKSGLNLQLAGEPIEEMENAYPFVKKDENKEKI
HHCCHHCCCCHHHHHHHHHHHHHEEEECCCCCEEEECCCCHHHHHHCCCCCCCCCCHHHH
EKINKALDDMKKDGTLQNISKKWFGENVTEKSKK
HHHHHHHHHHHCCCCHHHHHHHHCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA