Click here to switch to the map view.

The map label for this gene is ybbF [H]

Identifier: 170756930

GI number: 170756930

Start: 1507126

End: 1508481

Strand: Direct

Name: ybbF [H]

Synonym: CLD_3191

Alternate gene names: 170756930

Gene position: 1507126-1508481 (Clockwise)

Preceding gene: 170755643

Following gene: 170757611

Centisome position: 38.08

GC content: 34.0

Gene sequence:

>1356_bases
ATGTCAAATGTAAAAGATATAGCTCAAAGTATATATGACATAATTGGTGGTAGTAGCAATATAGTTTCATTTACGCATTG
TATGACAAGATTGAGACTTGTGCTTAAGGATCAAAATAATCTAGAGATGAAGGCTATAAAAAAAATTGATGGAGTTATGG
GCGTAGTACAGCAACAAAATCAACTTCAAATAATTCTTGGACCAGGTAGAGTAAATAAAGTTACAGAGGAATTTGAAAAG
CTTTGTGGAATTCAGATAGAAGCAGTAACAAAAGAGGTTGAGTTTGGAGATGGAAGTAAGCTAAGAGAAGAAATAAAGGA
AAAGAATGCAACGCCATTTAAATTATTTTTAAAGAAATTATCTAATATATTCATACCATTAATTCCAGCATTTATAGCTT
GTGGATTAGTTACTGCAATATTAAATATAGTGCTTAAATTAGATCCAGCATTTGCAGAAACAACAATTGGAGGATTATTA
AAAATAGCAGGTAATGCAGTGTTTTGGGGGTTAAATCTATTTGTAGGTGTTAATGCAGCTAAAGAATTCGGTGGTTCTCC
AATGCTTGGAGGTACTATGGCGGCTATAATATCTCATCCAGAATTAGCTAAGGTAACATTGAATGGTCAAAAGCTTTTAC
CTGGTAGAGGCGGTATTATTGCAGTATTATTAGTTGTTGCATTTTCAAGTTTTTTAGAAAAGAAAGTAAGAAAAATAATG
CCAGATGCATTAGATTTATTTATGACTCCATTAATAGTAATATTGGTATCAACTTTTGTTTCAATATTTGCATTACAACC
AGCTGGTGGATTTATTTCAGATGCTATAGGTAATGGAACTAAAGCAGCAATTTCAGGTGGTGGAGCCGTAACAGGGTTTA
TATTAGGAGGATTTTTCCTACCATTAGTAATGACAGGGTTACATCAAGGACTAACGCCAATCCATGCGGATCTATTAAAA
ACTACAGGTTTAAATCCACTTCTTCCAATATTAGCTATGGCAGGAGCAGGACAAGTAGGAGCAGCTATAGCAGTTTTACT
AAGAACCAAAAATAAAAGATTAAAAAAGACAATAATCTCAGCATTACCAGTGGGAATCATGGGAGTTGGAGAACCTCTTA
TATATGGTGTAACATTGCCGTTAGGAAAGCCATTTATAGGAGCATGTATAGGAGGAGCAGTAGGTGGTGCAGTTCAAGCT
TTGTTTAAAGTATCTTCAACATCAATGGGCTTATCTGGATTGCCATTAGCCGCAATAACTAGTACACCATTATTATTTAT
TATAGGTTTGGTAGCAGCATATATAGGTGGATTTTTTGCAACCTTACTTTTAGGATTTGAAGATCCAATAGAATAA

Upstream 100 bases:

>100_bases
TAGATAAAAATAGAATAATTATAGGGTGTAATTTAGAAATAAGATTATTGTTTAAATTTAAAACGTTCAGTTACATTTAA
AAATAAAGGGGGATTTTATT

Downstream 100 bases:

>100_bases
TCTTTAAAATATATATAAAGCTACAGTTAAATATTATTAATATACTAATGAGTAAGGTATAAAAGGAATAGACGAGATAT
TGGGAAAAAACAAAATAAAA

Product: PTS system, IIBC components

Products: NA

Alternate protein names: Phosphotransferase enzyme IIB component; PTS system EIIB component; Permease IIC component; PTS system EIIC component [H]

Number of amino acids: Translated: 451; Mature: 450

Protein sequence:

>451_residues
MSNVKDIAQSIYDIIGGSSNIVSFTHCMTRLRLVLKDQNNLEMKAIKKIDGVMGVVQQQNQLQIILGPGRVNKVTEEFEK
LCGIQIEAVTKEVEFGDGSKLREEIKEKNATPFKLFLKKLSNIFIPLIPAFIACGLVTAILNIVLKLDPAFAETTIGGLL
KIAGNAVFWGLNLFVGVNAAKEFGGSPMLGGTMAAIISHPELAKVTLNGQKLLPGRGGIIAVLLVVAFSSFLEKKVRKIM
PDALDLFMTPLIVILVSTFVSIFALQPAGGFISDAIGNGTKAAISGGGAVTGFILGGFFLPLVMTGLHQGLTPIHADLLK
TTGLNPLLPILAMAGAGQVGAAIAVLLRTKNKRLKKTIISALPVGIMGVGEPLIYGVTLPLGKPFIGACIGGAVGGAVQA
LFKVSSTSMGLSGLPLAAITSTPLLFIIGLVAAYIGGFFATLLLGFEDPIE

Sequences:

>Translated_451_residues
MSNVKDIAQSIYDIIGGSSNIVSFTHCMTRLRLVLKDQNNLEMKAIKKIDGVMGVVQQQNQLQIILGPGRVNKVTEEFEK
LCGIQIEAVTKEVEFGDGSKLREEIKEKNATPFKLFLKKLSNIFIPLIPAFIACGLVTAILNIVLKLDPAFAETTIGGLL
KIAGNAVFWGLNLFVGVNAAKEFGGSPMLGGTMAAIISHPELAKVTLNGQKLLPGRGGIIAVLLVVAFSSFLEKKVRKIM
PDALDLFMTPLIVILVSTFVSIFALQPAGGFISDAIGNGTKAAISGGGAVTGFILGGFFLPLVMTGLHQGLTPIHADLLK
TTGLNPLLPILAMAGAGQVGAAIAVLLRTKNKRLKKTIISALPVGIMGVGEPLIYGVTLPLGKPFIGACIGGAVGGAVQA
LFKVSSTSMGLSGLPLAAITSTPLLFIIGLVAAYIGGFFATLLLGFEDPIE
>Mature_450_residues
SNVKDIAQSIYDIIGGSSNIVSFTHCMTRLRLVLKDQNNLEMKAIKKIDGVMGVVQQQNQLQIILGPGRVNKVTEEFEKL
CGIQIEAVTKEVEFGDGSKLREEIKEKNATPFKLFLKKLSNIFIPLIPAFIACGLVTAILNIVLKLDPAFAETTIGGLLK
IAGNAVFWGLNLFVGVNAAKEFGGSPMLGGTMAAIISHPELAKVTLNGQKLLPGRGGIIAVLLVVAFSSFLEKKVRKIMP
DALDLFMTPLIVILVSTFVSIFALQPAGGFISDAIGNGTKAAISGGGAVTGFILGGFFLPLVMTGLHQGLTPIHADLLKT
TGLNPLLPILAMAGAGQVGAAIAVLLRTKNKRLKKTIISALPVGIMGVGEPLIYGVTLPLGKPFIGACIGGAVGGAVQAL
FKVSSTSMGLSGLPLAAITSTPLLFIIGLVAAYIGGFFATLLLGFEDPIE

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane [H]

COG id: COG1263

COG function: function code G; Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788769, Length=467, Percent_Identity=33.6188436830835, Blast_Score=216, Evalue=2e-57,
Organism=Escherichia coli, GI1790159, Length=464, Percent_Identity=29.7413793103448, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI2367362, Length=436, Percent_Identity=26.605504587156, Blast_Score=161, Evalue=8e-41,
Organism=Escherichia coli, GI48994906, Length=471, Percent_Identity=29.0870488322718, Blast_Score=156, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018113
- InterPro:   IPR001996
- InterPro:   IPR003352
- InterPro:   IPR013013 [H]

Pfam domain/function: PF00367 PTS_EIIB; PF02378 PTS_EIIC [H]

EC number: =2.7.1.69 [H]

Molecular weight: Translated: 47198; Mature: 47067

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS01035 PTS_EIIB_TYPE_1_CYS ; PS51098 PTS_EIIB_TYPE_1 ; PS51103 PTS_EIIC_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVKDIAQSIYDIIGGSSNIVSFTHCMTRLRLVLKDQNNLEMKAIKKIDGVMGVVQQQN
CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
QLQIILGPGRVNKVTEEFEKLCGIQIEAVTKEVEFGDGSKLREEIKEKNATPFKLFLKKL
CEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHH
SNIFIPLIPAFIACGLVTAILNIVLKLDPAFAETTIGGLLKIAGNAVFWGLNLFVGVNAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHEEEHHHHEECCHH
KEFGGSPMLGGTMAAIISHPELAKVTLNGQKLLPGRGGIIAVLLVVAFSSFLEKKVRKIM
HHCCCCCCCCHHHHHHHCCCCCEEEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHC
PDALDLFMTPLIVILVSTFVSIFALQPAGGFISDAIGNGTKAAISGGGAVTGFILGGFFL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHH
PLVMTGLHQGLTPIHADLLKTTGLNPLLPILAMAGAGQVGAAIAVLLRTKNKRLKKTIIS
HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
ALPVGIMGVGEPLIYGVTLPLGKPFIGACIGGAVGGAVQALFKVSSTSMGLSGLPLAAIT
HHCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
STPLLFIIGLVAAYIGGFFATLLLGFEDPIE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SNVKDIAQSIYDIIGGSSNIVSFTHCMTRLRLVLKDQNNLEMKAIKKIDGVMGVVQQQN
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
QLQIILGPGRVNKVTEEFEKLCGIQIEAVTKEVEFGDGSKLREEIKEKNATPFKLFLKKL
CEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHH
SNIFIPLIPAFIACGLVTAILNIVLKLDPAFAETTIGGLLKIAGNAVFWGLNLFVGVNAA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHEEEHHHHEECCHH
KEFGGSPMLGGTMAAIISHPELAKVTLNGQKLLPGRGGIIAVLLVVAFSSFLEKKVRKIM
HHCCCCCCCCHHHHHHHCCCCCEEEEECCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHC
PDALDLFMTPLIVILVSTFVSIFALQPAGGFISDAIGNGTKAAISGGGAVTGFILGGFFL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCEEEECCCCHHHHHHHHHHHH
PLVMTGLHQGLTPIHADLLKTTGLNPLLPILAMAGAGQVGAAIAVLLRTKNKRLKKTIIS
HHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHH
ALPVGIMGVGEPLIYGVTLPLGKPFIGACIGGAVGGAVQALFKVSSTSMGLSGLPLAAIT
HHCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
STPLLFIIGLVAAYIGGFFATLLLGFEDPIE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]