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The map label for this gene is ydcI [H]

Identifier: 170756784

GI number: 170756784

Start: 213355

End: 215511

Strand: Direct

Name: ydcI [H]

Synonym: CLD_0604

Alternate gene names: 170756784

Gene position: 213355-215511 (Clockwise)

Preceding gene: 170755895

Following gene: 170756893

Centisome position: 5.39

GC content: 30.0

Gene sequence:

>2157_bases
ATGAACAATATAAACAGTATTTTATCAAAAGAACTTAACATATCCATTAAATATATAGATGCAGTTATAGATTTATTAGA
TCAGGGAAATACAGTACCTTTTATAGCAAGATATAGAAAAGAAGTAACAGGAGGTATGAGTGACGAAACGCTTAGAGAGC
TCTTTGAAAGGCTTACGTATTTAAGAAATTTAAGTTCTAAGAAAGAGGATGTTATAAGACTCATAGAGGAGCAAGGCAAA
CTTACAGAAGAGCTTAAAACATCTATAATTAATTGTAAAACTGTTACAGAAGTAGAGGACTTATATAGACCTTATAGACC
AAAAAGAAGGACAAGAGCTACTATAGCAGAAGAAAAAGGATTAAAGCCTTTAGCAGAAATAATATTAGAAGGTAATTTTA
AAGAAGATATAAAAGTATATGCTAGTGAATTCATAAATGAAGAAAAAGAAGTAAAGACTATTGAAGAAGCTCTTCAGGGT
GCTATGGATATAATAAGCGAAGTTATATCTGATGAAGCAGAATACAGAAAATGGATAAGGAATTTTGTTTTTAATGAAGG
AGTAATAGAAACTAAAGGTGAAAGCATGGAACCTACTCCTTACGAAATGTATTATGATTATAAAGAAAATGTAAAAAATA
TTCCTCCTCATCGAATACTAGCTATAAATAGAGGAGAAAAAGAAAAAATATTAACAGCAAAAGTTACTTGTAATGAAGAT
AAAATAATAGATTATTTAAAAAGTAGATCATTAAAAGGAAATAAGGAAACGGATGTATATATAGAGGAGTCTGTTAAAGA
TTCTTTAAAAAGATTAATATATCCATCCATAGAAAGAGAGATAAGATCAGAGTTAACAGAAAAAGGTGAAGAAGGGGCAA
TAAAAATATTTAAAGAGAATCTAAAGGCCCTTTTGATGCAAGCACCTATAAAGGATAAAGTAGTTTTAGGATATGACCCA
GGGTTTAGAACCGGATGTAAGATAGCAGTATTAGATGAAACAGGAAAATTATTAGATACAGCTACAGTTTATGCTACAGC
ACCACAAAATGATGTAGAAGGTTCTATAAAAGTATTAAAAGAATTAATATACAAATATGATGTTGATGTAATATCTTTAG
GAAATGGAACAGCTAGTAGAGAATCAGAAGAGGTTATATCAAAAATGCTTAAAGAAATAAAAGAAGAAAAAGGCAAAGAT
ATATATTATGTTATAGTATCTGAAGCAGGAGCCTCTGTTTATTCTGCGTCAAAATTAGCTACAGAAGAATATCCAGATAT
AAATGTTTCTTTAAGAGGTGCTATATCTATAGGTAGAAGACTTCAAGATCCTCTAGCAGAACTTGTAAAAATAGATCCTA
AGTCTATAGGGGTAGGACAATATCAACACGATGTATCTCAAAAAAAATTAGATGAATCATTAAAAGGTGTGGTAGAAGAT
TGTGTTAATGCGGTAGGAGTAGACTTAAATACTGCAACACCATCACTTTTATCTTATATTTCAGGCATTAATAGCTCTAT
AGCTAAAAATATAGTAGCTTATAGAGAGGAAATAGGGAAATTTAAAAATAGAAAAGAATTATTAAAAGTAAAAAGGTTAG
GACAAAAAGCCTTTGAGCAATGTGCAGGTTTTCTTAGAGTTATGGAAAGTAAAGAACCTTTAGATAATACAGGAGTCCAT
CCAGAGTCCTATGAGGGAACCAAGAAGTTTTTAAGCTTGTTACAATATGATATAAAAGATGTAAAAAATAATAAATTACA
GGATATAGATGATAGGGTTAATAATATAGGACTAGATGATATATGTAATAAAATAGATATAGGGAAACCTACACTATTAG
ATATTATAAAAGAAATAAAAAAACCAGGAAGAGATCCAAGAGAAGATTTACCTAAACCTATATTAAAGACAGGGATTGTT
GATATAACTCAATTAAAGCCAGACATGGTTCTAATGGGTACCGTTAGGAATGTAGCTGATTTTGGAGCCTTTGTAGACAT
AGGAGTTCATCAAGATGGCTTAGTACATATAAGTCAACTTTCAGATAGCTTTGTAAAACATCCTTTAGATATAGTAAAAG
TGGGAGATATAGTGGAAGTTAGAATATTGGAAGTAGATAAAAAGAGAAACAGAATCTCTTTAAGCATGAAAAAATAA

Upstream 100 bases:

>100_bases
CCTATAAATTGTTTATAATTTAATTTATATTAATTTGCCAAAGGATATATAACTGGTATAATATATTTTTAGTGACTTTA
TTTAATATTTGGAGGTAAAG

Downstream 100 bases:

>100_bases
ATCATTGGATAAATATTAATATTGAATTTAAATTATTAATAGTATATAATAAAAATGCATAAAATTAATATTAATATCTT
CAGGGCGGGGTGTAATTCCC

Product: RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 718; Mature: 718

Protein sequence:

>718_residues
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTYLRNLSSKKEDVIRLIEEQGK
LTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKGLKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQG
AMDIISEVISDEAEYRKWIRNFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKENLKALLMQAPIKDKVVLGYDP
GFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLKELIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKD
IYYVIVSEAGASVYSASKLATEEYPDINVSLRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQCAGFLRVMESKEPLDNTGVH
PESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDDICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIV
DITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDKKRNRISLSMKK

Sequences:

>Translated_718_residues
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTYLRNLSSKKEDVIRLIEEQGK
LTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKGLKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQG
AMDIISEVISDEAEYRKWIRNFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKENLKALLMQAPIKDKVVLGYDP
GFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLKELIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKD
IYYVIVSEAGASVYSASKLATEEYPDINVSLRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQCAGFLRVMESKEPLDNTGVH
PESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDDICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIV
DITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDKKRNRISLSMKK
>Mature_718_residues
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTYLRNLSSKKEDVIRLIEEQGK
LTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKGLKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQG
AMDIISEVISDEAEYRKWIRNFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKENLKALLMQAPIKDKVVLGYDP
GFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLKELIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKD
IYYVIVSEAGASVYSASKLATEEYPDINVSLRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQCAGFLRVMESKEPLDNTGVH
PESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDDICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIV
DITQLKPDMVLMGTVRNVADFGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDKKRNRISLSMKK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=783, Percent_Identity=34.7381864623244, Blast_Score=425, Evalue=1e-119,
Organism=Homo sapiens, GI27597090, Length=775, Percent_Identity=21.2903225806452, Blast_Score=86, Evalue=1e-16,
Organism=Escherichia coli, GI87082262, Length=729, Percent_Identity=45.5418381344307, Blast_Score=622, Evalue=1e-179,
Organism=Escherichia coli, GI1787140, Length=77, Percent_Identity=44.1558441558442, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17511129, Length=750, Percent_Identity=32.4, Blast_Score=320, Evalue=2e-87,
Organism=Caenorhabditis elegans, GI17552892, Length=406, Percent_Identity=24.8768472906404, Blast_Score=81, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321552, Length=428, Percent_Identity=23.8317757009346, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI62484314, Length=768, Percent_Identity=33.0729166666667, Blast_Score=398, Evalue=1e-111,
Organism=Drosophila melanogaster, GI24640080, Length=704, Percent_Identity=22.3011363636364, Blast_Score=103, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 81154; Mature: 81154

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTY
CCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRNLSSKKEDVIRLIEEQGKLTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKG
HHHCCCHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
LKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQGAMDIISEVISDEAEYRKWIR
CHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
NFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
HHHHCCCCEECCCCCCCCCCHHEEECHHHHCCCCCCCEEEEECCCCCCCEEEEEEECCHH
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKEN
HHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHH
LKALLMQAPIKDKVVLGYDPGFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLK
HHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHEEEEEECCCCCCCHHHHHHH
ELIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKDIYYVIVSEAGASVYSASKLA
HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHH
TEEYPDINVSLRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQ
HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAGFLRVMESKEPLDNTGVHPESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDD
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHH
ICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVAD
HHHHCCCCCCHHHHHHHHHHCCCCCCHHHCCHHHHHHCCCHHHHCCCCEEEHHHHHHHHH
FGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDKKRNRISLSMKK
HCCCEEECCCCCCCEEHHHHHHHHHHCCHHHEECCCEEEEEEEEECCCCCCEEEEECC
>Mature Secondary Structure
MNNINSILSKELNISIKYIDAVIDLLDQGNTVPFIARYRKEVTGGMSDETLRELFERLTY
CCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRNLSSKKEDVIRLIEEQGKLTEELKTSIINCKTVTEVEDLYRPYRPKRRTRATIAEEKG
HHHCCCHHHHHHHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHCC
LKPLAEIILEGNFKEDIKVYASEFINEEKEVKTIEEALQGAMDIISEVISDEAEYRKWIR
CHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
NFVFNEGVIETKGESMEPTPYEMYYDYKENVKNIPPHRILAINRGEKEKILTAKVTCNED
HHHHCCCCEECCCCCCCCCCHHEEECHHHHCCCCCCCEEEEECCCCCCCEEEEEEECCHH
KIIDYLKSRSLKGNKETDVYIEESVKDSLKRLIYPSIEREIRSELTEKGEEGAIKIFKEN
HHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHH
LKALLMQAPIKDKVVLGYDPGFRTGCKIAVLDETGKLLDTATVYATAPQNDVEGSIKVLK
HHHHHHHCCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHEEEEEECCCCCCCHHHHHHH
ELIYKYDVDVISLGNGTASRESEEVISKMLKEIKEEKGKDIYYVIVSEAGASVYSASKLA
HHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHH
TEEYPDINVSLRGAISIGRRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLDESLKGVVED
HCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
CVNAVGVDLNTATPSLLSYISGINSSIAKNIVAYREEIGKFKNRKELLKVKRLGQKAFEQ
HHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CAGFLRVMESKEPLDNTGVHPESYEGTKKFLSLLQYDIKDVKNNKLQDIDDRVNNIGLDD
HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHH
ICNKIDIGKPTLLDIIKEIKKPGRDPREDLPKPILKTGIVDITQLKPDMVLMGTVRNVAD
HHHHCCCCCCHHHHHHHHHHCCCCCCHHHCCHHHHHHCCCHHHHCCCCEEEHHHHHHHHH
FGAFVDIGVHQDGLVHISQLSDSFVKHPLDIVKVGDIVEVRILEVDKKRNRISLSMKK
HCCCEEECCCCCCCEEHHHHHHHHHHCCHHHEECCCEEEEEEEEECCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]