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The map label for this gene is ycbZ [H]

Identifier: 170756653

GI number: 170756653

Start: 1596862

End: 1599180

Strand: Direct

Name: ycbZ [H]

Synonym: CLD_3112

Alternate gene names: 170756653

Gene position: 1596862-1599180 (Clockwise)

Preceding gene: 170755815

Following gene: 170755911

Centisome position: 40.34

GC content: 26.43

Gene sequence:

>2319_bases
ATGTTAAAAAAAATAGAGCCAAAAGATTTATTATATAATTTGGAACTAGATGATATTAATATAGATAGAACCCAAAAGTA
TACTCCGGAATATAACTCTATATATGAAAAGATAAATCTTGCTTTGGATATAGATAAACCAGGATACAATTTATACTTAG
TAGATGATTTTTCTAAAGAAAAATTAAATAGTATAATAAATTTTATAAATCAAAAACTAGAGAAAAAAAGTAAGCCAAAG
GATATTTGCTATGTAGTTTTAGAGGAAGAAAGATACCCTTATAGTATATATTTAGAAAATGGGAAAGGTAAAACATTAAA
AGAAAAATTAAAAGATATTCAAACAAAATATAATGAATGTATATATGATTTTTATAACAAATCTTCCAATAAAGAAAAAG
AAATTATTTTAGAGAGTATGGAGAAAAAAAGGAGTGAAATAGTAAACGAACTTATAGAGGAGTCAAAAAAAGAAGGTTTT
GAAATAAAAACTGGTGTATCTGGCTTTGTCTTCATGCCTATAAAGGATGGTAATTCTCTAAGTGAAAGTGAATATGAAGA
CTTAAATAAAGAAGATAAAGAAGAGATATTAGAAAAAGTATCTAAATTAAAAGAAAAGGCAGAATCTTCTTTAGAAATAT
TAGCTGATATGGAGAGAGAAGGATTAGAAAAATTAAAGGATATAATGAAAACTTGTTTGGAAATGGAAATGAAAGGTTCA
AAGGAAGAATATAGAATGGAGTTTGAAGATAATATTCAGGCTCTGGATTTTTTAAATAGTGTTTGCAGAAATATAGAAAA
GGAATTAATAGAAAGTTACACTTCAAGCTATGAAGAAGATCAAGAATCTATAGCAAAGGTTATATATAAATATAAAGTAA
ATGTAATAGTAGACAATACTTTAAACAAAAGTCCTTTAGTTATATTTGAAGAAAATCCCTCAGTAAATAATTTAGTTGGA
AGCATAGAATACGAAAATAAAAGTGGAGTATATTATACAGATGCTAGTTTAATTAAAGCCGGATCACTTTTAAAAGCTAA
TGAGGGCTGCTTAATTGTGAGAGCTAATAGTTTGTTTACAAATGGCTCAGCTTATTTTTATTTAAAAAAAGCTCTCATAA
ATGATAAGATAGATTTTGATTATAATAAGGGATATCTAGAACTATTATCTTTGGGAGGATTAAAGCCGGAGCCAATAAAC
ACTAAATTAAAGGTAATAATTATAGGTGATTATGAAACTTACAATTTGCTTTACAATTATGATGAAGATTTTAAAAAGAT
ATTTAAGCTAAAATCAGAATATAATAAAGTAGTGGATATAAATAGCAAGAGTAAAGAACAGATTTGCAAAAATATATATG
ATATATGTGAAAATAAAGATTTAAAAAATATAAATGAAGAGGCTGTAAAAGAAGTATGCAAATATTTATCAAGAAAAGCT
GAAAATAAAAATAAATTTTATTTTGATAATTATGAAATAGATAGATTATTAATACAAGCGGATAGTAAAGCTAGGATTGA
AGATAGAGACATTATAACAAAAGAAGATATTCAATTTGTAGCTTATGAAAAAGAGGAAATAGAAAAAGAAGTCATGGAAG
GTTATGAAAAAGAAAGAATATTTCTAGATGTAAAGGGAGATAAAGTTGGTCAAGTAAATGGACTATCTGTAATAGATTTA
GGATATGCAAGTTTTGGAAGGCCTATTAGAATAACTTGTTGCTGTTATAAGGGAAATGGAGATATTATAGATATCCAAAA
GGAGAGTAATTTAAGTGGAAATATACACAATAAAGCTATAAGCACATTAAAGGGGTATATAAATAGTATAATAGGGAAAT
ATGATACGTTGCCAGTAGATTTTCATTTAAGTTTTGAACAGATATATGGAACAGTGGATGGAGATAGCGCTTCCGTAGCG
GAGGCCATAGCTATGTTATCTGCTTTAAGTAATATACCTGTTAGACAAAGTATAGCAGTTACAGGATCAATAAATCAGTT
TGGTCAGGTTCAGCCTATAGGTGGTGTAAATGAAAAAATAGAAGGATTTTATGAGGTATGTAGATATAAAAAAGATATAA
AGGATAAGGGGATATTAATACCAAAATCAAATAAAGAAAACTTAGTGTTAAATAAAGAAGTAGAAGAGGCTATTAAAAAC
GGAGAGTTTAGTATATATACTATGGAAACTTTGGAGGATGCAGTAAAAATACTCCTAGGAGAAAAAAATTTAAAATTTAA
TGAATTAATAGTGGAGATAGAAAAAGAACTGAAAAAGTATAATAAGAAATCTAAAAAATGCAGAAAAATAAAATTATGA

Upstream 100 bases:

>100_bases
TAATTTTATATTTTTTATTATGAAAATATGAACCTCTTTAGTTACTAAAATAAACCTTAATGAATATTAATATATTAACG
ACTAAAAGGGGGAGTGAAAC

Downstream 100 bases:

>100_bases
AAAATTATAAATAGATAGATTATAATTAATATAAATGAATTTAAATAAGATGACTTTTGTTTAGTGAAGAAGTCATCTTA
TTGATTCCAAAAACCGGGTA

Product: ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 772; Mature: 772

Protein sequence:

>772_residues
MLKKIEPKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKPGYNLYLVDDFSKEKLNSIINFINQKLEKKSKPK
DICYVVLEEERYPYSIYLENGKGKTLKEKLKDIQTKYNECIYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGF
EIKTGVSGFVFMPIKDGNSLSESEYEDLNKEDKEEILEKVSKLKEKAESSLEILADMEREGLEKLKDIMKTCLEMEMKGS
KEEYRMEFEDNIQALDFLNSVCRNIEKELIESYTSSYEEDQESIAKVIYKYKVNVIVDNTLNKSPLVIFEENPSVNNLVG
SIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFTNGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPIN
TKLKVIIIGDYETYNLLYNYDEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERIFLDVKGDKVGQVNGLSVIDL
GYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAISTLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVA
EAIAMLSALSNIPVRQSIAVTGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEEAIKN
GEFSIYTMETLEDAVKILLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL

Sequences:

>Translated_772_residues
MLKKIEPKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKPGYNLYLVDDFSKEKLNSIINFINQKLEKKSKPK
DICYVVLEEERYPYSIYLENGKGKTLKEKLKDIQTKYNECIYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGF
EIKTGVSGFVFMPIKDGNSLSESEYEDLNKEDKEEILEKVSKLKEKAESSLEILADMEREGLEKLKDIMKTCLEMEMKGS
KEEYRMEFEDNIQALDFLNSVCRNIEKELIESYTSSYEEDQESIAKVIYKYKVNVIVDNTLNKSPLVIFEENPSVNNLVG
SIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFTNGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPIN
TKLKVIIIGDYETYNLLYNYDEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERIFLDVKGDKVGQVNGLSVIDL
GYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAISTLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVA
EAIAMLSALSNIPVRQSIAVTGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEEAIKN
GEFSIYTMETLEDAVKILLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL
>Mature_772_residues
MLKKIEPKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKPGYNLYLVDDFSKEKLNSIINFINQKLEKKSKPK
DICYVVLEEERYPYSIYLENGKGKTLKEKLKDIQTKYNECIYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGF
EIKTGVSGFVFMPIKDGNSLSESEYEDLNKEDKEEILEKVSKLKEKAESSLEILADMEREGLEKLKDIMKTCLEMEMKGS
KEEYRMEFEDNIQALDFLNSVCRNIEKELIESYTSSYEEDQESIAKVIYKYKVNVIVDNTLNKSPLVIFEENPSVNNLVG
SIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFTNGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPIN
TKLKVIIIGDYETYNLLYNYDEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERIFLDVKGDKVGQVNGLSVIDL
GYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAISTLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVA
EAIAMLSALSNIPVRQSIAVTGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEEAIKN
GEFSIYTMETLEDAVKILLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=448, Percent_Identity=28.7946428571429, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI1786643, Length=170, Percent_Identity=28.2352941176471, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17556486, Length=197, Percent_Identity=29.9492385786802, Blast_Score=70, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 89041; Mature: 89041

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKIEPKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKPGYNLYLVDDFSKE
CCCCCCHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCEEEEEECCCHH
KLNSIINFINQKLEKKSKPKDICYVVLEEERYPYSIYLENGKGKTLKEKLKDIQTKYNEC
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
IYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGFEIKTGVSGFVFMPIKDGNSL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCCCC
SESEYEDLNKEDKEEILEKVSKLKEKAESSLEILADMEREGLEKLKDIMKTCLEMEMKGS
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KEEYRMEFEDNIQALDFLNSVCRNIEKELIESYTSSYEEDQESIAKVIYKYKVNVIVDNT
HHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECC
LNKSPLVIFEENPSVNNLVGSIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFT
CCCCCEEEECCCCCCCCEEEEEEECCCCCEEEECHHHHHCCCCEECCCCEEEEEECCEEE
NGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPINTKLKVIIIGDYETYNLLYNY
CCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEEECC
DEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
CHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERI
CCCCCEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCEE
FLDVKGDKVGQVNGLSVIDLGYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAI
EEEECCCCCCCCCCEEEEEECHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHH
STLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVAEAIAMLSALSNIPVRQSIAV
HHHHHHHHHHHCCCCCCEEEEEEEHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
TGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEEAIKN
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECHHHHHHHHC
GEFSIYTMETLEDAVKILLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL
CCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLKKIEPKDLLYNLELDDINIDRTQKYTPEYNSIYEKINLALDIDKPGYNLYLVDDFSKE
CCCCCCHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHEEEEEEECCCCCEEEEEECCCHH
KLNSIINFINQKLEKKSKPKDICYVVLEEERYPYSIYLENGKGKTLKEKLKDIQTKYNEC
HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHH
IYDFYNKSSNKEKEIILESMEKKRSEIVNELIEESKKEGFEIKTGVSGFVFMPIKDGNSL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCCCC
SESEYEDLNKEDKEEILEKVSKLKEKAESSLEILADMEREGLEKLKDIMKTCLEMEMKGS
CCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KEEYRMEFEDNIQALDFLNSVCRNIEKELIESYTSSYEEDQESIAKVIYKYKVNVIVDNT
HHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECC
LNKSPLVIFEENPSVNNLVGSIEYENKSGVYYTDASLIKAGSLLKANEGCLIVRANSLFT
CCCCCEEEECCCCCCCCEEEEEEECCCCCEEEECHHHHHCCCCEECCCCEEEEEECCEEE
NGSAYFYLKKALINDKIDFDYNKGYLELLSLGGLKPEPINTKLKVIIIGDYETYNLLYNY
CCCEEEEEEHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCEEEEEEECC
DEDFKKIFKLKSEYNKVVDINSKSKEQICKNIYDICENKDLKNINEEAVKEVCKYLSRKA
CHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
ENKNKFYFDNYEIDRLLIQADSKARIEDRDIITKEDIQFVAYEKEEIEKEVMEGYEKERI
CCCCCEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCEE
FLDVKGDKVGQVNGLSVIDLGYASFGRPIRITCCCYKGNGDIIDIQKESNLSGNIHNKAI
EEEECCCCCCCCCCEEEEEECHHHCCCCEEEEEEEECCCCCEEEEECCCCCCCCHHHHHH
STLKGYINSIIGKYDTLPVDFHLSFEQIYGTVDGDSASVAEAIAMLSALSNIPVRQSIAV
HHHHHHHHHHHCCCCCCEEEEEEEHHHHEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
TGSINQFGQVQPIGGVNEKIEGFYEVCRYKKDIKDKGILIPKSNKENLVLNKEVEEAIKN
EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCEEECHHHHHHHHC
GEFSIYTMETLEDAVKILLGEKNLKFNELIVEIEKELKKYNKKSKKCRKIKL
CCEEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]