Definition Clostridium botulinum B1 str. Okra, complete genome.
Accession NC_010516
Length 3,958,233

Click here to switch to the map view.

The map label for this gene is 170756652

Identifier: 170756652

GI number: 170756652

Start: 1091584

End: 1091907

Strand: Direct

Name: 170756652

Synonym: CLD_3582

Alternate gene names: NA

Gene position: 1091584-1091907 (Clockwise)

Preceding gene: 170755448

Following gene: 170757013

Centisome position: 27.58

GC content: 30.56

Gene sequence:

>324_bases
ATGGCTTCAAATATAGAATTTGTAGAATATGTTTGTGACCAAATAAGTGGCGCTGGTGATATAACTTATAAAAAAATGTT
TGGTGATTATGGAGTCTACTGTAATGAAAAAATAATAGGATTAATATGTGATAATCAATTTTTCTTAAAAATAACAAAGG
CTGGTAAAGAGTTATTGCATGAAGCAATAGAAGCTCCCGCTTATAAAGGTGCAAAGCCATCATTTCTCATTGAATCTTTG
GATAATAGGGAATACTTAGCTAAAATTGTGTCTGCGACTTATAAAGAGCTTCCTATGCCAAAACCTAAAAAAACTAAAAA
ATAG

Upstream 100 bases:

>100_bases
TATTATTAAGATTAATGTTCATATTTTATATAGTGAACAGAAGGTATTTTATAAAAGGGTTTTAAATAATGACAAGTATT
CATATAATGGGGGAATTAAT

Downstream 100 bases:

>100_bases
TTGAAATTGGAATACAAAATATATTTAGTTAGGGGAGAATAAAGGATGTTTATTTATGATACATTAGAAAATATAGGTAT
TGAAACATTACATGAAACGT

Product: TfoX domain-containing protein

Products: NA

Alternate protein names: ORF 3 [H]

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MASNIEFVEYVCDQISGAGDITYKKMFGDYGVYCNEKIIGLICDNQFFLKITKAGKELLHEAIEAPAYKGAKPSFLIESL
DNREYLAKIVSATYKELPMPKPKKTKK

Sequences:

>Translated_107_residues
MASNIEFVEYVCDQISGAGDITYKKMFGDYGVYCNEKIIGLICDNQFFLKITKAGKELLHEAIEAPAYKGAKPSFLIESL
DNREYLAKIVSATYKELPMPKPKKTKK
>Mature_106_residues
ASNIEFVEYVCDQISGAGDITYKKMFGDYGVYCNEKIIGLICDNQFFLKITKAGKELLHEAIEAPAYKGAKPSFLIESLD
NREYLAKIVSATYKELPMPKPKKTKK

Specific function: Unknown

COG id: COG3070

COG function: function code K; Regulator of competence-specific genes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007076 [H]

Pfam domain/function: PF04993 TfoX_N [H]

EC number: NA

Molecular weight: Translated: 12063; Mature: 11932

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASNIEFVEYVCDQISGAGDITYKKMFGDYGVYCNEKIIGLICDNQFFLKITKAGKELLH
CCCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCEECCEEEEEEECCEEEEHHHHHHHHHHH
EAIEAPAYKGAKPSFLIESLDNREYLAKIVSATYKELPMPKPKKTKK
HHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
ASNIEFVEYVCDQISGAGDITYKKMFGDYGVYCNEKIIGLICDNQFFLKITKAGKELLH
CCCHHHHHHHHHHCCCCCCHHHHHHHCCCCCEECCEEEEEEECCEEEEHHHHHHHHHHH
EAIEAPAYKGAKPSFLIESLDNREYLAKIVSATYKELPMPKPKKTKK
HHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1987149 [H]