| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170756582
Identifier: 170756582
GI number: 170756582
Start: 1117623
End: 1118897
Strand: Direct
Name: 170756582
Synonym: CLD_3560
Alternate gene names: NA
Gene position: 1117623-1118897 (Clockwise)
Preceding gene: 170755538
Following gene: 170757646
Centisome position: 28.24
GC content: 32.08
Gene sequence:
>1275_bases ATGGCAAAGATAAAAATACCATATCACAAGAAAATGATTGAAATAGGGATAGAAGATAAAAATTTAGTAGGAATTTTAGA ATCAAAGGCAGATGAATATAAAAGAAATTTAAGCCAAGAAGAAATTGTTGAGGCTGCATTGGACAATCCTATACAATGCG AAAGATTAGAAGATTTGGTAAAGGGAAAGAAGAACATGGTTATAATAACCAGTGATCATACGAGACCAGTACCAAGTAAG ATAACAATGCCTATACTTTTAAGAAGAATAAGAGAGGTTAATCCTGATATAGATATAAAAATATTGATTGCTACAGGTTT TCATAGAGAATCAACAAAAGAAGAGCTTATAAATAAATTTGGCGAAGAAATAGTTAAAAATGAAAATATAGTTATGCATG TATCAACTGATGATAGCACTTTAGTGAAGGTTGGAACATTACCATCTGGCGGTGATCTTATATTAAATAAATTAGCAATG GAAACAGAACTTCTAATAGCAGAAGGATTTATAGAATCACATTTCTTTGCAGGATTTTCAGGTGGAAGAAAGAGTATACT ACCTGGAATAGCTTCTGCAAAAACTATAATGGCAAATCATTGTGGTGAATTTATTGCTAGTCCCAATGCTAGAACTGGAA TATTAAAAGATAATCCAGTACACAAAGACATGATTTATGCCGCTGAAAAAGCTAATTTAGCTTTTATATTAAATGTGGTA ATAGATAGTGAAAAGAAAGTTATAAATGCTTTTGCAGGACATAGACAATATGCCCATGAAACAGGATGTAAATTTGTACT TGAACTTTCAAAAGTTGAAAAGGTAAAAGCAGACATAGTGGTTTCAAGTAATGGAGGATATCCATTAGATCAAAATATAT ATCAATCAGTAAAAGGTATGACAGCTGCTGAGTCTACCTGCAAGGAAGGCGGAGTAATAATAATGGTAGCAGCTTGTAAT GATGGACATGGAGGTCAATCATTTTATGATAATTTAGCTAATAGTAAATCACCAAGAGAACTTTTAGATAGAATAGCCAA AGTTCCTAGATGTGAAACAGTTCCAGATCAATGGGAATTTCAAATATTAGCTAGGATGTTAGATAAGTTTACAGTAATTT TGGTTACAGATATGTGTGATCCCAATATGATTAAAGCTATGCATATGGAGCATGCATATAATTTTGAAGAAGCTTTAAAT AGAGCTTATAAGCTAAAGGGAAAAGACGCTAAAGTAGCGGTAATACCTGATGGTGTGTCTGTAATTGTAGGATAA
Upstream 100 bases:
>100_bases AAATTTTGTATAGTTTACGTAATTGTTTTAGGAATCATGGCTTATTTTATGGCACCTGTGTTTGGATTCTAATTGCTTAA ACTAATGAGGAGGATGAAAT
Downstream 100 bases:
>100_bases AAATTTATTATTAAACATAAATAGATTTTGGAGGTAATTTATATGGATATTTTAGTATGTATAAAACAAGTTCCGGGAAC ATCAAAAGTAGAGGTGGATT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 424; Mature: 423
Protein sequence:
>424_residues MAKIKIPYHKKMIEIGIEDKNLVGILESKADEYKRNLSQEEIVEAALDNPIQCERLEDLVKGKKNMVIITSDHTRPVPSK ITMPILLRRIREVNPDIDIKILIATGFHRESTKEELINKFGEEIVKNENIVMHVSTDDSTLVKVGTLPSGGDLILNKLAM ETELLIAEGFIESHFFAGFSGGRKSILPGIASAKTIMANHCGEFIASPNARTGILKDNPVHKDMIYAAEKANLAFILNVV IDSEKKVINAFAGHRQYAHETGCKFVLELSKVEKVKADIVVSSNGGYPLDQNIYQSVKGMTAAESTCKEGGVIIMVAACN DGHGGQSFYDNLANSKSPRELLDRIAKVPRCETVPDQWEFQILARMLDKFTVILVTDMCDPNMIKAMHMEHAYNFEEALN RAYKLKGKDAKVAVIPDGVSVIVG
Sequences:
>Translated_424_residues MAKIKIPYHKKMIEIGIEDKNLVGILESKADEYKRNLSQEEIVEAALDNPIQCERLEDLVKGKKNMVIITSDHTRPVPSK ITMPILLRRIREVNPDIDIKILIATGFHRESTKEELINKFGEEIVKNENIVMHVSTDDSTLVKVGTLPSGGDLILNKLAM ETELLIAEGFIESHFFAGFSGGRKSILPGIASAKTIMANHCGEFIASPNARTGILKDNPVHKDMIYAAEKANLAFILNVV IDSEKKVINAFAGHRQYAHETGCKFVLELSKVEKVKADIVVSSNGGYPLDQNIYQSVKGMTAAESTCKEGGVIIMVAACN DGHGGQSFYDNLANSKSPRELLDRIAKVPRCETVPDQWEFQILARMLDKFTVILVTDMCDPNMIKAMHMEHAYNFEEALN RAYKLKGKDAKVAVIPDGVSVIVG >Mature_423_residues AKIKIPYHKKMIEIGIEDKNLVGILESKADEYKRNLSQEEIVEAALDNPIQCERLEDLVKGKKNMVIITSDHTRPVPSKI TMPILLRRIREVNPDIDIKILIATGFHRESTKEELINKFGEEIVKNENIVMHVSTDDSTLVKVGTLPSGGDLILNKLAME TELLIAEGFIESHFFAGFSGGRKSILPGIASAKTIMANHCGEFIASPNARTGILKDNPVHKDMIYAAEKANLAFILNVVI DSEKKVINAFAGHRQYAHETGCKFVLELSKVEKVKADIVVSSNGGYPLDQNIYQSVKGMTAAESTCKEGGVIIMVAACND GHGGQSFYDNLANSKSPRELLDRIAKVPRCETVPDQWEFQILARMLDKFTVILVTDMCDPNMIKAMHMEHAYNFEEALNR AYKLKGKDAKVAVIPDGVSVIVG
Specific function: Unknown
COG id: COG3875
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46920; Mature: 46789
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKIKIPYHKKMIEIGIEDKNLVGILESKADEYKRNLSQEEIVEAALDNPIQCERLEDLV CCEEECCHHHEEEEECCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH KGKKNMVIITSDHTRPVPSKITMPILLRRIREVNPDIDIKILIATGFHRESTKEELINKF CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHH GEEIVKNENIVMHVSTDDSTLVKVGTLPSGGDLILNKLAMETELLIAEGFIESHFFAGFS HHHHHCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GGRKSILPGIASAKTIMANHCGEFIASPNARTGILKDNPVHKDMIYAAEKANLAFILNVV CCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEE IDSEKKVINAFAGHRQYAHETGCKFVLELSKVEKVKADIVVSSNGGYPLDQNIYQSVKGM ECCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHEEEEEEEECCCCCCCCHHHHHHHCCC TAAESTCKEGGVIIMVAACNDGHGGQSFYDNLANSKSPRELLDRIAKVPRCETVPDQWEF HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHH QILARMLDKFTVILVTDMCDPNMIKAMHMEHAYNFEEALNRAYKLKGKDAKVAVIPDGVS HHHHHHHHCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHEEECCCCCEEEEECCCCE VIVG EEEC >Mature Secondary Structure AKIKIPYHKKMIEIGIEDKNLVGILESKADEYKRNLSQEEIVEAALDNPIQCERLEDLV CEEECCHHHEEEEECCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHH KGKKNMVIITSDHTRPVPSKITMPILLRRIREVNPDIDIKILIATGFHRESTKEELINKF CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHH GEEIVKNENIVMHVSTDDSTLVKVGTLPSGGDLILNKLAMETELLIAEGFIESHFFAGFS HHHHHCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC GGRKSILPGIASAKTIMANHCGEFIASPNARTGILKDNPVHKDMIYAAEKANLAFILNVV CCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEEEE IDSEKKVINAFAGHRQYAHETGCKFVLELSKVEKVKADIVVSSNGGYPLDQNIYQSVKGM ECCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHEEEEEEEECCCCCCCCHHHHHHHCCC TAAESTCKEGGVIIMVAACNDGHGGQSFYDNLANSKSPRELLDRIAKVPRCETVPDQWEF HHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHH QILARMLDKFTVILVTDMCDPNMIKAMHMEHAYNFEEALNRAYKLKGKDAKVAVIPDGVS HHHHHHHHCEEEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHEEECCCCCEEEEECCCCE VIVG EEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA