| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is murF
Identifier: 170756422
GI number: 170756422
Start: 1623346
End: 1624734
Strand: Direct
Name: murF
Synonym: CLD_3092
Alternate gene names: 170756422
Gene position: 1623346-1624734 (Clockwise)
Preceding gene: 170755176
Following gene: 170757278
Centisome position: 41.01
GC content: 28.37
Gene sequence:
>1389_bases ATGGAAAATATTAAACTAGAAGAAATAATAAAAGCAGTTAATGGTGAGTTAGTGATAACTGGAGAAAAAGATGAATATAA TTCAGTAAGCACAGATACAAGAAAAATAGAAAAGGGAGATATATTTATAGCCTTAAAAGGAGAAAATTTTAATGGAAATA ACTTTGTAGAAATGGCAATAGAAAAGGGTGCCGCTTTATGCATAGTAAGTGAAATAAATTTTAGTGAGGGAAAAGTGGGT AAAGCTTCCTATATAATAAAGGTAGAGAATGCTAATAAGGCTCTTTTAGATTTAGCTAAATACTATAGAAGTAAACTAGA TATAAAAGTGGTTGCTATTACTGGATCTACAGGAAAAACATCCACAAAGGATTTAGTAGGGGCTGTGCTTGCAGAAAAAT ATAAAGTATTTAAAACAGAGGGAAACTTTAATAATGAGATAGGACTTCCTCTTATGATTTTTAAATTGGATAAAAGTTAT GATATAGCAGTTTTAGAAATGGGAATGAATCATTTTAATGAAATACACAATATGGCAGAAGCAGCAAAACCAGATATAGC TATAATAACTAATATAGGTATATCTCATATAGAGAATTTAGGATCTAGGGAAAATATTTTAAAAGCAAAACTAGAAATAA CAGATTTCTTCTGTAAGGATAGTATTTTAATAATAAATGGAGACGATGATCTTCTATCAAATTTTGAAAGTGATAAATTT AAGGTATACAAAATAGGCACAGATAAAAAATTTGATTTTAATGGAGATAATTTAAATTTAGAGGCAGAGAGTATAGAATT TGATATATTAGAACAAGGTAAAACAGCTTATAAATGTTTTGGCGTAAATGTACCTGGAAAGCATAATGTGCTTAATTCTC TTACAGCTATAGCTTGTGGAAGAGTTTTAGATATAAATTACAGGGATATACAAACTGGGATAAAAAATTTAAAAGCTACT TCTATGAGATTAGATATCGTTAAGGAAAAGGGATTTACTATAATAAATGATTGTTATAATGCAAGTCCCGATTCTATGAA AGCAGCTATAGATGTAATGAAAAATATAAAGGGAAAAAGAACTATAGCTTTATTAGGTTCTATGATGGAACTTGGATCCG AAGGGTATAGAGCTCATAGGGAAGTTTCTGAATATGCAAGAGAAAAGGGAATAGATCTATTATTTTCCATAGGAGAATTT AGTGAAGCATATAGAGAAGGGTTTGAAGAAATAAACAAAGAGAATTATAAAAGCTTTTTAAATAATGAAGAAGCAGCAAA ATACATAAAAAATATAATAAAAGATGGTGATATAATATTAATTAAAGCATCTAGAGCTATGAAGCTAGAAGAAATAGTAA AAGAACTAAGGATAAAACAAGAAAAATAG
Upstream 100 bases:
>100_bases TATCAAATATTAAAGGATAAAACTATTCACTTTGATGAAAGGGAAGTAATAGAAGAGCTAATAAAAGAAATATAATTACT CTAAAAATGGGAGTGTTAAC
Downstream 100 bases:
>100_bases GAGGTGACTTGCTCACATAATTAGAGCAATTATTTATGAATAGAATAGTATATGCAGTGCTTTTAGCCTTTTTAATATCA ATATTAGGAGGACCAATATT
Product: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
Products: NA
Alternate protein names: D-alanyl-D-alanine-adding enzyme; UDP-MurNAc-pentapeptide synthetase [H]
Number of amino acids: Translated: 462; Mature: 462
Protein sequence:
>462_residues MENIKLEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEINFSEGKVG KASYIIKVENANKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSY DIAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF KVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKAT SMRLDIVKEKGFTIINDCYNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEF SEAYREGFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELRIKQEK
Sequences:
>Translated_462_residues MENIKLEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEINFSEGKVG KASYIIKVENANKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSY DIAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF KVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKAT SMRLDIVKEKGFTIINDCYNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEF SEAYREGFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELRIKQEK >Mature_462_residues MENIKLEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAIEKGAALCIVSEINFSEGKVG KASYIIKVENANKALLDLAKYYRSKLDIKVVAITGSTGKTSTKDLVGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSY DIAVLEMGMNHFNEIHNMAEAAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF KVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACGRVLDINYRDIQTGIKNLKAT SMRLDIVKEKGFTIINDCYNASPDSMKAAIDVMKNIKGKRTIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEF SEAYREGFEEINKENYKSFLNNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELRIKQEK
Specific function: Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein [H]
COG id: COG0770
COG function: function code M; UDP-N-acetylmuramyl pentapeptide synthase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MurCDEF family [H]
Homologues:
Organism=Escherichia coli, GI1786274, Length=472, Percent_Identity=31.7796610169492, Blast_Score=224, Evalue=1e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004101 - InterPro: IPR013221 - InterPro: IPR000713 - InterPro: IPR005863 [H]
Pfam domain/function: PF01225 Mur_ligase; PF02875 Mur_ligase_C; PF08245 Mur_ligase_M [H]
EC number: =6.3.2.10 [H]
Molecular weight: Translated: 51703; Mature: 51703
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MENIKLEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAI CCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCHHEEECCCEEEEEECCCCCCCCEEEEEE EKGAALCIVSEINFSEGKVGKASYIIKVENANKALLDLAKYYRSKLDIKVVAITGSTGKT CCCCEEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC STKDLVGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAE CHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEEEECCCCCEEEEHHCHHHHHHHHHHHH AAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF HCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHEEEEECCCEEEEECCHHHHHCCCCCCE KVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACG EEEEECCCCEECCCCCCEEEECCCEEEEEHHCCCCEEEEEECCCCCCHHHHHHHHHHHCC RVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDCYNASPDSMKAAIDVMKNIKGKR CEEECCHHHHHHHHHHHHHHHEEEEEECCCCCEEEEHHCCCCCHHHHHHHHHHHHCCCCH TIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINKENYKSFL HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCHHHHHHHH NNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELRIKQEK CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure MENIKLEEIIKAVNGELVITGEKDEYNSVSTDTRKIEKGDIFIALKGENFNGNNFVEMAI CCCCCHHHHHHHHCCCEEEECCCCCCCCCCCCHHEEECCCEEEEEECCCCCCCCEEEEEE EKGAALCIVSEINFSEGKVGKASYIIKVENANKALLDLAKYYRSKLDIKVVAITGSTGKT CCCCEEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC STKDLVGAVLAEKYKVFKTEGNFNNEIGLPLMIFKLDKSYDIAVLEMGMNHFNEIHNMAE CHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEEEECCCCCEEEEHHCHHHHHHHHHHHH AAKPDIAIITNIGISHIENLGSRENILKAKLEITDFFCKDSILIINGDDDLLSNFESDKF HCCCCEEEEECCCHHHHHHCCCHHHHHHHHHHHEEEEECCCEEEEECCHHHHHCCCCCCE KVYKIGTDKKFDFNGDNLNLEAESIEFDILEQGKTAYKCFGVNVPGKHNVLNSLTAIACG EEEEECCCCEECCCCCCEEEECCCEEEEEHHCCCCEEEEEECCCCCCHHHHHHHHHHHCC RVLDINYRDIQTGIKNLKATSMRLDIVKEKGFTIINDCYNASPDSMKAAIDVMKNIKGKR CEEECCHHHHHHHHHHHHHHHEEEEEECCCCCEEEEHHCCCCCHHHHHHHHHHHHCCCCH TIALLGSMMELGSEGYRAHREVSEYAREKGIDLLFSIGEFSEAYREGFEEINKENYKSFL HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCHHHHHHHH NNEEAAKYIKNIIKDGDIILIKASRAMKLEEIVKELRIKQEK CCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]