Click here to switch to the map view.

The map label for this gene is yabR [H]

Identifier: 170756411

GI number: 170756411

Start: 3846173

End: 3846577

Strand: Reverse

Name: yabR [H]

Synonym: CLD_0954

Alternate gene names: 170756411

Gene position: 3846577-3846173 (Counterclockwise)

Preceding gene: 170755355

Following gene: 170756604

Centisome position: 97.18

GC content: 29.14

Gene sequence:

>405_bases
ATGACTTTGAATGCAGGTAGTATACTTGAAGGTACAGTAGTTAACATTACAAATTTTGGAGCTTTTGTTGAAATTGAAGG
TAAAACAGGTTTAGTGCACATATCAGAAGTGTCAGATAGCTATGTAAAAGACATTAGAGAATACTTAAAAGAACAAGATA
AAGTAAAGGTTAAAGTTATTTCCATAGATGATAAAGGAAAAATAAGTTTATCTATTAAGCAAGCTATGCAACAGAAAAAA
TCTTGTAAACCAGCAGAAATTGATTGGTCAAGAGAAAAACCTAAAAAGAATGAAGCAAATTTTGAAGATAGATTATCTAA
ATTCTTAAAAGATAGTGAAGAAAGATTCCAAGATTTGAAAAAACATCAAGACTCTAGAGGTAGAGGAAGTAAGAAAAGCT
ATTAA

Upstream 100 bases:

>100_bases
AAGAAAGGGGAGACTCCTGTAATAAACAACACACAATAATAAAATCGTTTTTAAATTTAAATTATATATACATTATTTAT
TAAGGAGGAGTCTTATTAAT

Downstream 100 bases:

>100_bases
AATAAAAGGCCTTATGGGCCTTTTTATTTATTTTAAAAAATGTATAAAAAAAATGAAATAAAGTGTTGACATAGTAAAGT
TTGTGGGATATAATTATTTA

Product: hypothetical protein

Products: RNAn; a nucleoside diphosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MTLNAGSILEGTVVNITNFGAFVEIEGKTGLVHISEVSDSYVKDIREYLKEQDKVKVKVISIDDKGKISLSIKQAMQQKK
SCKPAEIDWSREKPKKNEANFEDRLSKFLKDSEERFQDLKKHQDSRGRGSKKSY

Sequences:

>Translated_134_residues
MTLNAGSILEGTVVNITNFGAFVEIEGKTGLVHISEVSDSYVKDIREYLKEQDKVKVKVISIDDKGKISLSIKQAMQQKK
SCKPAEIDWSREKPKKNEANFEDRLSKFLKDSEERFQDLKKHQDSRGRGSKKSY
>Mature_133_residues
TLNAGSILEGTVVNITNFGAFVEIEGKTGLVHISEVSDSYVKDIREYLKEQDKVKVKVISIDDKGKISLSIKQAMQQKKS
CKPAEIDWSREKPKKNEANFEDRLSKFLKDSEERFQDLKKHQDSRGRGSKKSY

Specific function: Involved In Mrna Degradation. Hydrolyzes Single-Stranded Polyribonucleotides Processively In The 3' To 5' Direction. Involved In The RNA Degradosome, A Multi-Enzyme Complex Important In RNA Processing And Messenger RNA Degradation. [C]

COG id: COG1098

COG function: function code J; Predicted RNA binding protein (contains ribosomal protein S1 domain)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI145693187, Length=79, Percent_Identity=44.3037974683544, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI87082262, Length=108, Percent_Identity=39.8148148148148, Blast_Score=65, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6320850, Length=119, Percent_Identity=33.6134453781513, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1000 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 3328 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967 [H]

Pfam domain/function: PF00575 S1 [H]

EC number: 2.7.7.8 [C]

Molecular weight: Translated: 15297; Mature: 15165

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLNAGSILEGTVVNITNFGAFVEIEGKTGLVHISEVSDSYVKDIREYLKEQDKVKVKVI
CCCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEHHHCHHHHHHHHHHHHCCCCEEEEEE
SIDDKGKISLSIKQAMQQKKSCKPAEIDWSREKPKKNEANFEDRLSKFLKDSEERFQDLK
EECCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHH
KHQDSRGRGSKKSY
HHCCCCCCCCCCCC
>Mature Secondary Structure 
TLNAGSILEGTVVNITNFGAFVEIEGKTGLVHISEVSDSYVKDIREYLKEQDKVKVKVI
CCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEHHHCHHHHHHHHHHHHCCCCEEEEEE
SIDDKGKISLSIKQAMQQKKSCKPAEIDWSREKPKKNEANFEDRLSKFLKDSEERFQDLK
EECCCCCEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHH
KHQDSRGRGSKKSY
HHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): 4500 [C]

Specific activity: NA

Km value (mM): NA

Substrates: RNAn+1; phosphate [C]

Specific reaction: RNAn+1 + phosphate = RNAn + a nucleoside diphosphate [C]

General reaction: Nucleotidyl group transfer [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8113187; 7584024; 9384377 [H]