| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170756363
Identifier: 170756363
GI number: 170756363
Start: 2647124
End: 2648458
Strand: Reverse
Name: 170756363
Synonym: CLD_2115
Alternate gene names: NA
Gene position: 2648458-2647124 (Counterclockwise)
Preceding gene: 170755213
Following gene: 170757031
Centisome position: 66.91
GC content: 27.72
Gene sequence:
>1335_bases ATGAAAAAGGAAATACTAAAAGTAGAAAGAGGTAGCATAGCAGAGGAACTTGAAATAGAAGAGGGCGATTTTTTACTGTC TATAAATAATAAAGAAGTTAAAGATATTATCGACTATAAATTTTTAGTTTGTGATGAATACTTAGAAGTTGAAATAAAAA AAAATAACGGGGAAATTTGGGAACTAGAGATAGAAAAGGATTATGATGAGGATTTAGGAATAGAATTTAAAGCAGCTATA TTAGATGTACCTCAAAGATGCCATAATAATTGCTTATTTTGTTTTATAGATCAACTACCAAAAGGTATGAGAGAAACCCT ATATTTTAAAGATGATGATTCAAGATTATCTTTTCTTCAAGGAAATTTTCTTACTCTTACAAATATGAAGGATGAAGACA TAGACAGAATAATAAATTATAAAATAAGTCCTATAAATATATCTGTACATACTACAAATCCAGAACTTAGGGTCAAACTT TTAAATAATAGATTTGCAGGTAATTTATATGATAGGATGAAAAGGCTAGCCCAGGGTGGCATAAAAATGGATTGTCAGGT AGTTTTATGTCCAGGACTTAATAATGGAGAGGAACTAAAAAGAACCATTGAAGATTTATATGCTCTTTATCCTCAGGTTG AAAATTTAGCAGTAGTTCCAATAGGTGTTACAAAATTTAGAGAAGGATTATACCAATTTGAACTTTTTAATAAAGAAACT GCTAATAAAGAATTAGATATGGTAGAGGAATATCAAAACAAATTTATAAAGGAAATAGGAAAACCTTTTATAAGATTATC TGATGAATTCTATGTTATAGCAGAAAGAGAAGTGCCTAAAGAAGATTTTTATGATGGATTTAAACAATTAGAAGATGGTG TAGGGGTTATAAGGATATTTAGAAATAATATAAAGGATAATGTAAGCAAACTTTCAACTAAATCTAAAGGTAGTTTTTCA CTTATAACAGGACAATCTGCTTATAAAGAGATACTAGAGGCTAGTAAAATAATAAATAATCATAGTAATGATATAGATAT AGAAGTTATAAAAATAGATAATAATTTTTTTGGAAAGACCATTACTGTAGCTGGACTTATAACTGCCAAGGATATAATAG AACAAACACAGAAGAAAAATTTAGGAAAGTATGTTATAATTCCAGATGTAATGCTTAGAAAAGGATATGAATTAGCAGAT ATATCCGAACAAGTTTTCTTAGATGATGTAACACTAAAAGAATTAAGCAATAGTTTAAAAAGAGAAATTTTAGTATGCGA TTATACAGGAGAAGACTTAATAGATATAATAAATGAACATAGCAAGGAGGAATAA
Upstream 100 bases:
>100_bases TTTTGTATTTTAAAAATTGAATTTCAAGTTGTAAATTGACTAAATTACTATATTAATGTAATATAATTTAATGATAAATA TAAAATTTGGAGTTGAAAAA
Downstream 100 bases:
>100_bases AAATGGGAAAACCTATAGTTGCAATAGTAGGAAGACCTAATGTAGGTAAATCTACACTATTCAATAAATTAGCAGGAAAA AGGATAGCTATAGTACAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: FeS-Containing Oxidoreductase; FeS-Containing Cyanobacterial-Specific Oxidoreductase; PDZ Domain Protein; FeS-Containing Organism-Specific Oxidoreductase; FeS-Containing-Specific Oxidoreductase; Response Regulator Receiver Protein; PDZ Domain-Containing Protein
Number of amino acids: Translated: 444; Mature: 444
Protein sequence:
>444_residues MKKEILKVERGSIAEELEIEEGDFLLSINNKEVKDIIDYKFLVCDEYLEVEIKKNNGEIWELEIEKDYDEDLGIEFKAAI LDVPQRCHNNCLFCFIDQLPKGMRETLYFKDDDSRLSFLQGNFLTLTNMKDEDIDRIINYKISPINISVHTTNPELRVKL LNNRFAGNLYDRMKRLAQGGIKMDCQVVLCPGLNNGEELKRTIEDLYALYPQVENLAVVPIGVTKFREGLYQFELFNKET ANKELDMVEEYQNKFIKEIGKPFIRLSDEFYVIAEREVPKEDFYDGFKQLEDGVGVIRIFRNNIKDNVSKLSTKSKGSFS LITGQSAYKEILEASKIINNHSNDIDIEVIKIDNNFFGKTITVAGLITAKDIIEQTQKKNLGKYVIIPDVMLRKGYELAD ISEQVFLDDVTLKELSNSLKREILVCDYTGEDLIDIINEHSKEE
Sequences:
>Translated_444_residues MKKEILKVERGSIAEELEIEEGDFLLSINNKEVKDIIDYKFLVCDEYLEVEIKKNNGEIWELEIEKDYDEDLGIEFKAAI LDVPQRCHNNCLFCFIDQLPKGMRETLYFKDDDSRLSFLQGNFLTLTNMKDEDIDRIINYKISPINISVHTTNPELRVKL LNNRFAGNLYDRMKRLAQGGIKMDCQVVLCPGLNNGEELKRTIEDLYALYPQVENLAVVPIGVTKFREGLYQFELFNKET ANKELDMVEEYQNKFIKEIGKPFIRLSDEFYVIAEREVPKEDFYDGFKQLEDGVGVIRIFRNNIKDNVSKLSTKSKGSFS LITGQSAYKEILEASKIINNHSNDIDIEVIKIDNNFFGKTITVAGLITAKDIIEQTQKKNLGKYVIIPDVMLRKGYELAD ISEQVFLDDVTLKELSNSLKREILVCDYTGEDLIDIINEHSKEE >Mature_444_residues MKKEILKVERGSIAEELEIEEGDFLLSINNKEVKDIIDYKFLVCDEYLEVEIKKNNGEIWELEIEKDYDEDLGIEFKAAI LDVPQRCHNNCLFCFIDQLPKGMRETLYFKDDDSRLSFLQGNFLTLTNMKDEDIDRIINYKISPINISVHTTNPELRVKL LNNRFAGNLYDRMKRLAQGGIKMDCQVVLCPGLNNGEELKRTIEDLYALYPQVENLAVVPIGVTKFREGLYQFELFNKET ANKELDMVEEYQNKFIKEIGKPFIRLSDEFYVIAEREVPKEDFYDGFKQLEDGVGVIRIFRNNIKDNVSKLSTKSKGSFS LITGQSAYKEILEASKIINNHSNDIDIEVIKIDNNFFGKTITVAGLITAKDIIEQTQKKNLGKYVIIPDVMLRKGYELAD ISEQVFLDDVTLKELSNSLKREILVCDYTGEDLIDIINEHSKEE
Specific function: Unknown
COG id: COG1625
COG function: function code C; Fe-S oxidoreductase, related to NifB/MoaA family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51305; Mature: 51305
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKEILKVERGSIAEELEIEEGDFLLSINNKEVKDIIDYKFLVCDEYLEVEIKKNNGEIW CCCHHHEECCCCCHHHCEECCCCEEEEECCCHHHHHHHHHHEEECCEEEEEEECCCCCEE ELEIEKDYDEDLGIEFKAAILDVPQRCHNNCLFCFIDQLPKGMRETLYFKDDDSRLSFLQ EEEECCCCCCCCCCEEEHHHHHCHHHHCCCEEEEEHHHCCCCHHHCEEEECCCCCEEEEC GNFLTLTNMKDEDIDRIINYKISPINISVHTTNPELRVKLLNNRFAGNLYDRMKRLAQGG CCEEEEECCCHHHHHHHHCEEEEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCC IKMDCQVVLCPGLNNGEELKRTIEDLYALYPQVENLAVVPIGVTKFREGLYQFELFNKET CCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHCCHHHEEEECCCC ANKELDMVEEYQNKFIKEIGKPFIRLSDEFYVIAEREVPKEDFYDGFKQLEDGVGVIRIF CCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCEEHHH RNNIKDNVSKLSTKSKGSFSLITGQSAYKEILEASKIINNHSNDIDIEVIKIDNNFFGKT HHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCE ITVAGLITAKDIIEQTQKKNLGKYVIIPDVMLRKGYELADISEQVFLDDVTLKELSNSLK EEEEHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCHHCCCHHHHCCCHHHHHHHHHHH REILVCDYTGEDLIDIINEHSKEE HEEEEEECCCHHHHHHHHHCCCCC >Mature Secondary Structure MKKEILKVERGSIAEELEIEEGDFLLSINNKEVKDIIDYKFLVCDEYLEVEIKKNNGEIW CCCHHHEECCCCCHHHCEECCCCEEEEECCCHHHHHHHHHHEEECCEEEEEEECCCCCEE ELEIEKDYDEDLGIEFKAAILDVPQRCHNNCLFCFIDQLPKGMRETLYFKDDDSRLSFLQ EEEECCCCCCCCCCEEEHHHHHCHHHHCCCEEEEEHHHCCCCHHHCEEEECCCCCEEEEC GNFLTLTNMKDEDIDRIINYKISPINISVHTTNPELRVKLLNNRFAGNLYDRMKRLAQGG CCEEEEECCCHHHHHHHHCEEEEEEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCC IKMDCQVVLCPGLNNGEELKRTIEDLYALYPQVENLAVVPIGVTKFREGLYQFELFNKET CCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHCCHHHEEEECCCC ANKELDMVEEYQNKFIKEIGKPFIRLSDEFYVIAEREVPKEDFYDGFKQLEDGVGVIRIF CCCHHHHHHHHHHHHHHHHCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHCCCCEEHHH RNNIKDNVSKLSTKSKGSFSLITGQSAYKEILEASKIINNHSNDIDIEVIKIDNNFFGKT HHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCE ITVAGLITAKDIIEQTQKKNLGKYVIIPDVMLRKGYELADISEQVFLDDVTLKELSNSLK EEEEHHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCCHHCCCHHHHCCCHHHHHHHHHHH REILVCDYTGEDLIDIINEHSKEE HEEEEEECCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA