| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is ispG
Identifier: 170756217
GI number: 170756217
Start: 2546167
End: 2547216
Strand: Reverse
Name: ispG
Synonym: CLD_2216
Alternate gene names: 170756217
Gene position: 2547216-2546167 (Counterclockwise)
Preceding gene: 170756743
Following gene: 170754900
Centisome position: 64.35
GC content: 32.48
Gene sequence:
>1050_bases ATGATGAGAAAATCAACTAAAAAAGTAAAAGTAGGAAGTATATATGTAGGAGGAGATTCTCCTATATCCATACAATCCAT GACAAATACAGATACTAGAGATGTTAAAAGTACACTAAATCAAATAAATAAGTTAGAAAAAATAGGCTGTGATATAATAA GATGCGCAGTACCAGATATAGAAGCTAGTGAAGCTTTAAAAATAATAACCAAGGAATCAAAAATTCCAGTGGTGGCAGAT ATACATTTTGATCATAAATTAGCCTTAGAATCTATAAAAAATGGAGTAGATGCCTTAAGAATAAACCCAGGAAATATAGG GTCCATGGAAAGGGTTAAGATGGTAGCAGAAGCCGCAAAGGGAAAATCTATTCCTATAAGGGTAGGAGTAAACTCAGGTT CCTTAAAAAAAGATATATTAGATAAATATGGTAGAGTATGCCCAGAAGCATTAGTAGAAAGTGCCCTTCAGCATGTGAAC ATATTAGAAAAATGCAATTTTAATGATATAGTAATATCTATAAAGTCTTCTAGCGTTATACAAATGATAGAAAGTTATAG ATTAATATCAGAAAAAGTAAATTATCCTTTGCATTTAGGAGTTACAGAAGCAGGAACTACCTTTAGAGGAACTATAAAAT CTAGTGTAGGTATAGGTACCCTGCTCGCAGAAGGTATAGGAGATACTATAAGAGTATCTATTACAGGAGATCCGCTAGAA GAAATTAAAATAGGAAAAGAAATATTGAGATCCTTAGGATATGTAAATGAAGGAATAGAATTTGTATCTTGTCCAACTTG TGGAAGAACTAATATAGATTTAATATCTATAGCCCAGGAGGTAGAAAAAAGGCTTTCAAACTGTAATAAGAATATTAAAG TAGCGGTAATGGGATGCGTAGTTAATGGGCCTGGGGAAGCAAGGGAAGCAGATATAGGTATAGCAGGAGGCAAAGGAGAA GGGCTTATATTCAAAAAGGGAGAGGTTATAAAAAAAGTTAAAGAAGAGAATATAATAGCTGAACTTATAAAAGAAATAGA AAAGATGTAA
Upstream 100 bases:
>100_bases AAATTTCATCGAAATCTAAGGATAACTTTATAAAAAACTTTGCTTAACATTATGAATTCATTGATTTTATTAGGGAAGTT TAAAACTAGGAGATGAAACA
Downstream 100 bases:
>100_bases TTTGTGAATACTTTAGTTTATTTAAATTAATTTGAATTTCAACATACATAGAAGATAGAGTATATAGAAGGTTCTTAGCT TTAGATAATAGAGTTTTAAC
Product: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Products: NA
Alternate protein names: 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase [H]
Number of amino acids: Translated: 349; Mature: 349
Protein sequence:
>349_residues MMRKSTKKVKVGSIYVGGDSPISIQSMTNTDTRDVKSTLNQINKLEKIGCDIIRCAVPDIEASEALKIITKESKIPVVAD IHFDHKLALESIKNGVDALRINPGNIGSMERVKMVAEAAKGKSIPIRVGVNSGSLKKDILDKYGRVCPEALVESALQHVN ILEKCNFNDIVISIKSSSVIQMIESYRLISEKVNYPLHLGVTEAGTTFRGTIKSSVGIGTLLAEGIGDTIRVSITGDPLE EIKIGKEILRSLGYVNEGIEFVSCPTCGRTNIDLISIAQEVEKRLSNCNKNIKVAVMGCVVNGPGEAREADIGIAGGKGE GLIFKKGEVIKKVKEENIIAELIKEIEKM
Sequences:
>Translated_349_residues MMRKSTKKVKVGSIYVGGDSPISIQSMTNTDTRDVKSTLNQINKLEKIGCDIIRCAVPDIEASEALKIITKESKIPVVAD IHFDHKLALESIKNGVDALRINPGNIGSMERVKMVAEAAKGKSIPIRVGVNSGSLKKDILDKYGRVCPEALVESALQHVN ILEKCNFNDIVISIKSSSVIQMIESYRLISEKVNYPLHLGVTEAGTTFRGTIKSSVGIGTLLAEGIGDTIRVSITGDPLE EIKIGKEILRSLGYVNEGIEFVSCPTCGRTNIDLISIAQEVEKRLSNCNKNIKVAVMGCVVNGPGEAREADIGIAGGKGE GLIFKKGEVIKKVKEENIIAELIKEIEKM >Mature_349_residues MMRKSTKKVKVGSIYVGGDSPISIQSMTNTDTRDVKSTLNQINKLEKIGCDIIRCAVPDIEASEALKIITKESKIPVVAD IHFDHKLALESIKNGVDALRINPGNIGSMERVKMVAEAAKGKSIPIRVGVNSGSLKKDILDKYGRVCPEALVESALQHVN ILEKCNFNDIVISIKSSSVIQMIESYRLISEKVNYPLHLGVTEAGTTFRGTIKSSVGIGTLLAEGIGDTIRVSITGDPLE EIKIGKEILRSLGYVNEGIEFVSCPTCGRTNIDLISIAQEVEKRLSNCNKNIKVAVMGCVVNGPGEAREADIGIAGGKGE GLIFKKGEVIKKVKEENIIAELIKEIEKM
Specific function: Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate [H]
COG id: COG0821
COG function: function code I; Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ispG family [H]
Homologues:
Organism=Escherichia coli, GI1788863, Length=342, Percent_Identity=47.0760233918129, Blast_Score=361, Evalue=1e-101,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR011005 - InterPro: IPR016425 - InterPro: IPR004588 [H]
Pfam domain/function: PF04551 GcpE [H]
EC number: =1.17.7.1 [H]
Molecular weight: Translated: 37758; Mature: 37758
Theoretical pI: Translated: 8.38; Mature: 8.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRKSTKKVKVGSIYVGGDSPISIQSMTNTDTRDVKSTLNQINKLEKIGCDIIRCAVPDI CCCCCCCEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCC EASEALKIITKESKIPVVADIHFDHKLALESIKNGVDALRINPGNIGSMERVKMVAEAAK CHHHHHHHEECCCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHC GKSIPIRVGVNSGSLKKDILDKYGRVCPEALVESALQHVNILEKCNFNDIVISIKSSSVI CCCCEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH QMIESYRLISEKVNYPLHLGVTEAGTTFRGTIKSSVGIGTLLAEGIGDTIRVSITGDPLE HHHHHHHHHHHHCCCCEEEEEECCCCEEEEEHHCCCCHHHHHHHCCCCEEEEEECCCCHH EIKIGKEILRSLGYVNEGIEFVSCPTCGRTNIDLISIAQEVEKRLSNCNKNIKVAVMGCV HHHHHHHHHHHHCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEE VNGPGEAREADIGIAGGKGEGLIFKKGEVIKKVKEENIIAELIKEIEKM ECCCCCCCCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MMRKSTKKVKVGSIYVGGDSPISIQSMTNTDTRDVKSTLNQINKLEKIGCDIIRCAVPDI CCCCCCCEEEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCC EASEALKIITKESKIPVVADIHFDHKLALESIKNGVDALRINPGNIGSMERVKMVAEAAK CHHHHHHHEECCCCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHC GKSIPIRVGVNSGSLKKDILDKYGRVCPEALVESALQHVNILEKCNFNDIVISIKSSSVI CCCCEEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHH QMIESYRLISEKVNYPLHLGVTEAGTTFRGTIKSSVGIGTLLAEGIGDTIRVSITGDPLE HHHHHHHHHHHHCCCCEEEEEECCCCEEEEEHHCCCCHHHHHHHCCCCEEEEEECCCCHH EIKIGKEILRSLGYVNEGIEFVSCPTCGRTNIDLISIAQEVEKRLSNCNKNIKVAVMGCV HHHHHHHHHHHHCCHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEE VNGPGEAREADIGIAGGKGEGLIFKKGEVIKKVKEENIIAELIKEIEKM ECCCCCCCCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11466286 [H]